How do you manage citations when writing on the web (blogs, etc?) Would be nice to have a reference manger that works in browser editors like #Mendeley does in office docs
When you say manage, do you mean insert during the writing process?
- AJCann
Yup, that would probably be the most valuable. For instance, even a Wordpress plugin that let me cite using the bibtex reference would be quite nice, if such a thing exists?
- Carl Boettiger
My thoughts on this are here: http://blogs.plos.org/mfenner.... Briefly, we should integrate citations as Wordpress links, this would give us a lot of interesting features for free.
- Martin Fenner
Thanks Martin, that's an excellent piece. Yes, I agree citations should be put in as links, though I'm not sure what links: as @rmpage points out, doi based links might make more sense than those pointing to a particular publisher? What track-back tools are available that could determine how many incoming links a paper has? How do these cope with multiple potential link urls to the same paper?
- Carl Boettiger
Carl, you point a big problem that goes beyond managing citations for a blog. I'm a big fan of DOIs, and I'm always confused why so many places prefer their own internal identifier (PubMed is a prime example).
- Martin Fenner
For the last few weeks our first year Biological Sciences students (n ~250) have been using Google Documents to write group reports on a biological topic of their choosing. We've been using Google Docs on our first year key skills module for several years now. It was originally introduced to Smash The State! Sock it to the Man! persuade students of the value of social software, but it was only this year I figured out how dumb I'd been in asking them to write individual documents when I could save myself tons of work by getting them to work in groups using the social features Google Docs provides. Or could I? Except for a few squabbles, the writing part went fairly smoothly. The Turnitin originality reports are OK, apart from a few bad habits we use Turnitin as a tool to flag up. So it was time to start marking. Which is hell. Why? Because abandoning a simple bigbox VLE has its costs. Here's my workflow: 1. Copy group allocations from Excel (used to randomize assignment to groups of...
- AJCann
Now that Mendeley is providing an API, Andrew Lang has written code that significantly leverages the information in our private ONS collection. We can now create public links that return the most updated results for specific tags, including multiple tags (which I don't think you can do on Mendeley).
- Jean-Claude Bradley
Now that the groups release is done, expect to see more activity fixing these loose ends up from Mendeley's side.
- Mr. Gunn
from YouFeed
Thanks MG - looking forward to the fixes but the current system is still a good start
- Jean-Claude Bradley
yes, JC, didn't mean to imply it wasn't :-) Just observing that, in a perfect world, you wouldn't have needed to do that & could have spent the time on more advanced functionality.
- Mr. Gunn
from YouFeed
Pleased to see that my PHP code to access the Mendeley API has been useful (it provides the OAuth layer underneath the ONS service). I guess we'll see more hacks around the Mendeley API until the API gets updated. Slightly puzzled that the ONS code uses string matching to access fields in the Mendeley response, rather than converting the JSON to a PHP object and querying that.
- Roderic Page
@Roderic. Your code is excellent and helped a lot. I use string parsing because that's the way I know best.
- Andrew Lang
OK, didn't want to have people pounding it and slowing it down for you, but if you say it's OK, I will.
- Mr. Gunn
MG I don't think that will be too much of a problem - that service is specific to our collection only - people will have to modify the source code to put in their own authentication info and run themselves to use for their own collections The source code is also available at http://onswebservices.wikispaces.com/mendele...
- Jean-Claude Bradley
Oh that's awesome. Alarmingly crowded... At the end there are discoveries in two directions at once at odd angles - anyone know what that was?
- Matthew Todd
Ah. The Wide-field Infrared Survey Explorer. My bad.
- Matthew Todd
It says: "error: authentication needed" But it also says I'm logged in...
- Björn Brembs
Ah: wrong password does not result in error logging in!
- Björn Brembs
I think this might be a bug we know about by now: When you mistype your username/password, it still looks like you're logged in without actually being logged in. If re-entering your account info doesn't fix it, could you let support@mendeley.com know? Thanks Björn!
- Victor / Mendeley Team
read this wonderful post and made a comment. Bora, I support your decision, too much energy and passion came to this blog from your side, so it's understandable. See you on new URL!
- Danica Radovanovic
I should have guessed that you would write an epic-length post about this. :-) It will be interesting to see whether the science blogosphere condenses around a few large networks or if there is a return to more blogging on single-author blogs.
- John (bird whisperer)
Any thoughts on what this means for blogging in general?
- Todd Hoff
John, I also found the tension between magazine and blog and corporate vs independent interesting.
- Todd Hoff
Yes, that was interesting, as is the conflict between print and web in the media as whole. I was barely aware of Seed Magazine. I knew it existed, but I only read an article if one of the Sb bloggers linked it, and even then pretty rarely. I agree with Bora that the two could have been better integrated.
- John (bird whisperer)
I had been aware of some discontent within Sb even before the Pepsi blog incident, but I didn't know how deeply it ran.
- John (bird whisperer)
Sorry to see you are leaving Sb, but I will be reading your stuff wherever you land (No Huffington Post for you though?) As long as you feed whatever blog url into friendfeed or twitter, I will see it.
- Just Joe
Yup, I need to change all the feed piping everywhere - FF, Fb, etc. tomorrow morning probably.
- Bora Zivkovic
Lovely piece of writing, Bora. I teared up at the end. Sigh.
- Mickey Schafer
I'm not sure it's about rewarding effort, I think it's appreciating and rewarding solid work that makes incremental advances instead of expecting everyone to get home runs.
- Christina Pikas
A related aspect is the 'old' findings that could (or still cannot) be 'explained' for lack of appropriate technology. The rhombomere segments in the hindbrain, for instance had been known of since the late 19th century, but until lipophilic dyes and hox genes walked into the labs nobody could make much sense of them. One reason I hate old issues of journals are not available on shelf for browsing.
- Kubke
Well my view, like I said previously is that we should measure use of individual works/objects. This isn't even all this hard if we do it properly. But something that is page-rank-like and captures all sorts of outputs and all sorts of uses could actually be quite interesting. We're just going round in circles shifting from one kind of observation bias to another at the moment.
- Cameron Neylon
"The depletion of ethane and acetylene become significant in the astrobiological sense because of this latest report of a hydrogen flux into the surface This is the key that suggests that these depletions are not just due to a lack of production but are due to some kind of chemical reaction at the surface."
- Anthony Citrano
from Bookmarklet
"It is one of Leicester's most famous exports – but no-one seems quite sure who invented Blu-Tack. And as manufacturer Bostik prepares to celebrate 40 years of the sticky putty, an appeal is being made for the mastermind to step forward. The substance, made from chalk, oil and other chemicals, was a by-product of an experiment to make a new sealant. The experiment was a complete failure, but someone started using the goo to put up notices. Once the company realised what they had, they turned it blue and the rest is history."
- AJCann
from Bookmarklet
"Image of the solar transit of the International Space Station (ISS) and Space Shuttle Atlantis 50 minutes before docking, taken from the area of Madrid (Spain) on May 16th 2010 at 13h 28min 55s UT. Atlantis has just begun the "R-bar pitch maneuver": the shuttle performs a backflip that exposes its heat-shield to the crew of the ISS that makes photographs of it; since its approach trajectory is between the ISS and the Earth, this means that we are seeing Atlantis essentially from above, with the payload bay door opened. Transit duration: 0.54s. Transit band width on Earth: 4.8 km. ISS distance to observer: 391 km. Speed: 7.4km/s."
- Mark H
from Bookmarklet
"Takahashi TOA-150 refractor (diameter 150mm, final focal 2500mm), Baader Herschel prism and Canon 5D Mark II. Exposure of 1/8000s at 100 ISO, extracted from a series of 16 images (4 images/s) started 2s before the predicted time."
- Mark H
"Interplanetary travel may not be the first thing that springs to mind when you think of Leicester. But the East Midlands city is home to a group of scientists and engineers trying to answer the question: is there life on Mars?"
- AJCann
from Bookmarklet
Seems appropriate: Mars is the red planet, and Leicester is the red cheese.
- Noel O'Boyle
This just has to be done. Classic Fantastic (Album Version) by the Fun Lovin' Criminals. Get the whole album from http://funlovincriminals.tv/classic... (I had to compress this MP3 by 1/3 to fit on FF)
They're playing in Edinburgh on Sept. 11th. I am getting my tickets today.
- Jan Wessnitzer
from iPod
Oh, didn't know that Jan (although I knew they were on da road) so thanks. £17.50 from Ticket Web. Can I say "This just has to be done" again? I think I just have !!
- Graham Steel
"The Great Debate – or the Shapely-Curtis Debate – took place at the Smithsonian Museum of Natural History between two eminent astronomers, Harlow Shapley and Heber Curtis. Shapely was arguing that the ’spiral nebulae’, that were observed at the time, were within our own Galaxy – and that our Galaxy was the Universe. He also argued that the Sun was not at its centre. Conversely, Curtis argued that the Sun was at the centre of our Galaxy but that the ’spiral nebulae’ were not inside our Galaxy at all. He suggested instead that the Universe was much larger than our Galaxy and that these nebulae were in fact other, ‘island’ universes."
- Mark H
from Bookmarklet
"Autumn 2010 promises to be an interesting time for University-level science courses in the UK. Although many colleagues around the country are presently unaware of the fact, students joining their degree programmes in October may arrive with very different background training in science compared with previous generations."
- AJCann
from Bookmarklet
“...technologies like spread spectrum encoding are already masking straightforward radio communications, while conventional broadcasting is giving way to such heavy use of fiber-optics that a planet like ours may go dark at radio wavelengths within a relatively short time as civilizations go, and no more than an infinitesimal flicker in cosmological terms. Thus the interest in alternatives like hunting up Dyson spheres...”
- Anthony Citrano
from Bookmarklet
"Why did the recent volcanic eruption in Iceland create so much ash? Although the large ash plume was not unparalleled in its abundance, its location was particularly noticeable because it drifted across such well populated areas. The Eyjafjallajökull volcano in southern Iceland began erupting on March 20, with a second eruption starting under the center of small glacier on April 14. Neither eruption was unusually powerful. The second eruption, however, melted a large amount of glacial ice which then cooled and fragmented lava into gritty glass particles that were carried up with the rising volcanic plume. Pictured above two days ago, lightning bolts illuminate ash pouring out of the Eyjafjallajökull volcano."
- AJCann
from Bookmarklet
My beef with Iceland: this thing has gone up before, and you knew it would do it again, so that all the world would have to talk about it. Why then did you have to give it such an unspellable jawcracker of a name?!
- Bill Hooker
"We’re excited to reveal that the Zotero project has begun preliminary development of a standalone version of the research software that will interact with browsers other than Firefox. Code has already been committed to Zotero’s open-source repository that provides a glimpse of how this new version might work. This proof of concept is allowing our developers to study how best to integrate Zotero with other popular browsers like Google Chrome and Microsoft Internet Explorer. Of course, Firefox is still an excellent web browser, and we’re confident that it will remain so for years to come. That said, we also want to provide the Zotero community with the opportunity to use other software when they choose to do so, or when they face institutional barriers to using Firefox."
- AJCann
from Bookmarklet
"There is no connection between illuminated, nocturnal calls of nature and cancer, despite what certain newspapers are claiming. Readers of today’s Daily Mail will have seen a story, Cancer danger of that night-time trip to the toilet, citing research by Professor Charalambos Kyriacou from our Department of Genetics and Dr Rachel Ben-Shlomo from the University of Haifa. The article begins: “Simply turning on a light at night for a few seconds to go to the toilet can cause changes that might lead to cancer, scientists claim.” In fact, neither Professor Kyriacou nor Dr Ben-Shlomo suggest anything of the sort."
- AJCann
from Bookmarklet
I know Charalambos "Bambos" Kyriacou, he would never claim such ridiculous things (except as a joke, he is very funny!).
- Björn Brembs