"I just tested it on 3.3.1 and it looks like it's putting rel="nofollow" on the links.  The test site I'm using is http://www.mastermindphp.com/b... you can see in the sidebar.  Maybe there is a plugin conflict?  If you have a page caching plugin you might try clearing the cache.  Let me know what result you were expecting specifically and I'll see if I can figure out what's happening on your site." - Andrew Shell