all mutations were non-synonymous in predicted coding frames; indels leading to frameshifts. often, multiple different types of mutations in genes. most were non-core genes (83%)
- Thomas Sharpton
@Ruchira - I'm waiting for it, but nothing so far
- Thomas Sharpton
Suggests selection against cells carrying attachment genes, selective force enhancing diversity in gene content
- Thomas Sharpton
mutant genes are rare in the environment. however, sequence diversity is higher when present when compared to core background
- Thomas Sharpton
Identify populations with diverse cell-surface genes. many subpopulations with different susceptibility regions.
- Thomas Sharpton
Why aren't all cells resistant? These mutations are associated with a growth rate cost. Also, greater susceptibility to other phages. Avrani et al 2011 Nature 474: 604-608
- Thomas Sharpton
Can the slower growers maintain a decent population size in the natural environment?
- Thomas Sharpton
Anyhow, summary: Viruses drive diversification of genomes through selection for resistant strains. fitness cost to resistance. Complex dynamic network of interactions.
- Thomas Sharpton