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BioGang Classics

BioGang Classics

A place to collect must-read, must-remember items for the biogang. Hat-tip: Cameron, Pawel (see first item).
Neil Saunders
@rogerhyam "if I have seen far it is because I have used other people's data" #ebio09 (via http://friendfeed.com/rdmpage...)
Pierre
Why people do not comment online articles? What is wrong with the online commenting system? I think this is one of the central issues in Science 2.0. Here is the test case, which is very demonstrative: http://friendfeed.com/the-lif... (via http://friendfeed.com/science...)
Pierre
“I'm thinking about putting a proposal to bring our data resources kicking and screaming into the Semantic Web. I'm thinking RDF publishing, Linked Data compliance, microformats, ontological tagging. Has anyone been involved in a project like this? Anyone care to share experiences or ideas?” - http://friendfeed.com/e...
re-posted to Biogang Classics for Archiving - Pierre
Pawel Szczesny
Pawel Szczesny
This is the single greatest essay on a practical to research. - Bosco Ho
Printed and read this last night. It's very interesting. - Michael Barton
Bill Hooker
Can a biologist fix a radio? - http://freelancingscience.com/2008...
"shows the emerging necessity to create formalized language designed to describe complicated systems of regulation of biochemical processes in living cells" - Bill Hooker
Pawel Szczesny
How to Think - Managing brain resources in an age of complexity. - http://www.technologyreview.com/blog...
Pawel Szczesny
Work on stuff that matters: first principles - Tim O'Reilly - http://radar.oreilly.com/2009...
Pierre
The Triumvirate of Scientific Data - http://peanutbutter.wordpress.com/2008...
hum... resharing does not provide a link to the original post on FF... - Pierre
@Pierre: the word "Reshare" is a link to the original post. - Bill Hooker
@Bill yes ! thank you ! - Pierre
Bill Hooker
“"The first principle is that you must not fool yourself—and you are the easiest person to fool. "—Richard P. Feynman” - http://friendfeed.com/e...
Bill Hooker
We need to change the system - http://mndoci.com/blog...
As Pawel points out in comments: "This is something that should be posted every two weeks. We tend to focus on things that make us more efficient in the current system, instead of questioning its foundation (publication pressure) and seeking long term solutions." - Bill Hooker
good point - "we need to change system", but only discussion about it is not enough. So how scientific blogosphere can make it? What should we do to make it happened? - Alexey
We need to take care, I think, with labels such as "the system". It potentially creates a "them and us" situation. For many people the sole criterion of "are things working" is "have I done all right by it"; for many people the answer is "yes"; those people will not perceive need for change and see calls for it as whinging by lesser achievers. So we really need to articulate the issues very well indeed, by way of concrete examples that are relevant to everyone. - Neil Saunders
Neil, couldn't agree more. I've met enough people who are very happy with the way things are, and they are reasonable people, so it can't all be bad. That said, there is so much that can be put on the back of the "publish or perish" model that we need to keep pegging away - Deepak Singh
As Alexey and Neil pointed out, there should be a framework that translates an idea/discussion into actual examples, or I would say products. The issue raised by this post (i.e. open science system) has been discussed by a lot of people, but no one came up with actual solutions or even great examples. I also discussed about the way most scientific blogs are and what to do to actually make a difference in details on my website: http://pangeables.blogspot.com/2008... - JWS
I don't know about frameworks. Prefer individuals taking the initiative like Jean-Claude, Cameron, Shirley, etc are doing, and somewhere along the way, the chasm will be crossed. I don't think it needs to be the scientific blogosphere doing it per se, but the community in general. We can/should highlight examples, and yes complaining about what's wrong only goes so far. - Deepak Singh
My thoughts are returning to a previous FF discussion on branding; some kind of "this research is certified open" logo and the criteria that must be met to earn it. - Neil Saunders
The MIAME of open science :) - Deepak Singh
Pawel Szczesny
Pierre
“I wish I could sort pubmed results on the 'Impact Factor'” - http://friendfeed.com/e...
Bill Hooker
"If most of your ideas aren't stupid, you're probably being too conservative. You're not bracketing the problem." -- worth remembering! - Bill Hooker
Bill Hooker
Building scientific communities - http://mndoci.com/blog...
Bill Hooker
Capturing biology one model at a time - http://pbeltrao.blogspot.com/2008...
Bill Hooker
On the Erosion of the Public Domain - john wilbanks' blog - http://network.nature.com/blogs...
where the idea for this room came from, also vital insight/satori for Open Science geeks - Bill Hooker
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