"who is helped by dressing up a severely disappointing setback as a “major step forward”?"
- Björn Brembs
via Bookmarklet
Context: "In the last few years gene hunters in one common disease after another have turned up a few causative variant genes, after vast effort, but the variants generally account for a small percentage of the overall burden of illness. With most common diseases, it turns out, the disease is caused not by ten very common variant genes but by 10,000 relatively rare ones. Today it’s the...
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- Daniel Mietchen
Dopamine Transporters in Striatum Correlate with Deactivation in the Default Mode Network during Visuospatial Attention - http://www.citeulike.org/user...
PLoS ONE, Vol. 4, No. 6. (30 June 2009), e6102. Background Dopamine and dopamine transporters (DAT, which regulate extracellular dopamine in the brain) are implicated in the modulation of attention but their specific roles are not well understood. Here we hypothesized that dopamine modulates attention by facilitation of brain deactivation in the default mode network (DMN). Thus, higher striatal DAT levels, which would result in an enhanced clearance of dopamine and hence weaker dopamine signals, would be associated to lower deactivation in the DMN during an attention task. Methodology/Principal Findings For this purpose we assessed the relationship between DAT in striatum (measured with positron emission tomography and [11C]cocaine used as DAT radiotracer) and brain activation and deactivation during a parametric visual attention task (measured with blood oxygenation level dependent functional magnetic resonance imaging) in healthy controls. We show that DAT availability in caudate...
- Björn Brembs
Nice. A huge, wall-sized electrophoresis gel run fresh each day would be a good addition.
- Matthew Todd
If I can ever make the appropriate contact in the art world, I bet I can sell gel photos, photomicrographs, chromatography papers with acridine orange splashed on them, and all kinds of other lab detritus as Art. For extra verisimilitude (and to jack up the price) you could stipulate that each ARTifact (hee) was the product or by-product of a real experiment in a real lab. I also once...
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- Bill Hooker
Bill - awesome. Contact the Tate Modern immediately.
- Matthew Todd
An overlooked potential benefit of OA: increased quality of science journalism, which in turn should improve public science awareness/literacy, resulting in higher demand for quality science journalism... a virtuous circle.
- Bill Hooker
Will give it a listen when I get home.
- Graham Steel
You won't hear anything, it's text. :-)
- Bill Hooker
Naw, I mean the Nature podcast Björn refers to..
- Graham Steel
Key passage; "Some journalists tell me they don't have access to any journals and have to go by the press-releases! No way any journalist can be a watchdog without information. So what can the journalists of today do who want to investigate? They have to call the scientists up. Either the scientists who did the study in question, or colleagues, to get other opinions. All of this is, of course, the far worse option than to read the literature and form your own opinion."
- Bora Zivkovic
This post http://scienceblogs.com/pharyng... reminded me of another reason science journalists need to have access and learn how to use Google Scholar, PubMed and Web of Knowledge: so they can find out what is going on in the lagre body of science, not just the few that bubble up for whatever weird reason to the more general media. Science doesn't happen in the news. If you want to know what's going on inside, you need to dig.
- Björn Brembs
Of course, sometimes you can't look at the paper being trumpeted because it isn't actually available yet, even behind a paywall...
- Chris Rowan
BMC Research Notes, Vol. 2, No. 1. (2009), 113. The fabric of science is changing, driven by a revolution in digital technologies that facilitate the acquisition and communication of massive amounts of data. This is changing the nature of collaboration and expanding opportunities to participate in science. If digital technologies are the engine of this revolution, digital data are its fuel. But for many scientific disciplines, this fuel is in short supply. The publication of primary data is not a universal or mandatory part of science, and despite policies and proclamations to the contrary, calls to make data publicly available have largely gone unheeded. In this short essay I consider why, and explore some of the challenges that lie ahead, as we work toward a database of everything. Vincent Smith
- Björn Brembs
I initially read that as "Bob Dole," which really didn't make a whole lot of sense...
- Chad Orzel
I was also wondering if Bjoern was switching to research on Viagra....
- Bora Zivkovic
I'm surprised this guy isn't more well-known. PhD in astrophysics from Harvard in '68, wrote some of the earliest computer games, one of the first developers on the Mac, helped invent podcasting, registered his own version of the semantic web, involved in open source content management systems, etc. Is now 73 and still active on the web with multiple websites and blogs. How many people like him are there on the planet? Not many I think.
- Björn Brembs
Why are some of my FF comments duplicated on Twitter?
Love it: "Yet people love to publish papers falsifying someone else's papers. Science is a single, gigantic post-publication tool, that's how it works. What else is a paper other than a comment to all the papers listed in the references? It's just the formats that vary and that just takes acclimatization. With a common standard and a single database, all we're doing is just tapping the...
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- Bora Zivkovic
Yes - not having seen Bora's comment, I have copied "What else is a paper other than a comment to all the papers listed in the references?" to paste it here. Thanks for the nice post, Björn!
- Daniel Mietchen
ok, but the fact is that libraries didn't have a monopoly - there were branch libraries, department libraries, people lend their personal books, departments and labs subscribe to journals - but it became financially untenable. Back in the day E used to charge libraries according to the # of subscriptions on campus - even if these were individual scientists' subscriptions that they...
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- Christina Pikas
@Christina: Thanks for the info. I'm not quite sure what you're trying to say, though. I tried to argue that some things are too important to leave to markets and archives was one thing. Surely library branches are not competing with the main library in any sense? I'm quite confused now...
- Björn Brembs
Are markets and monopoly the only alternatives? One could have a system with several archivers, but who do not compete in a market. Or that competition isn't severe enough (e.g. they are underwritten by other bodies).
- Bob O'Hara
Incidentally, it's a bit confusing because the discussion jumps around, talking about different actors: standards, curators (i.e. libraries), journals, and scientists. The issues will be slightly different for each actor, and may produce a difference stance on monopoly. e.g. a single standard is good, but a single journal bad.
- Bob O'Hara
you say that an argument against one scholarly db is that it would create a monopoly (I disagree with this, too, because there are many attempts at creating a single db - like Academic Search Premier, like Scopus, like WoS), and that monopolies aren't always bad. You give the example of the university library as a monopoly - which I contend it never has been and never will be. Indeed,...
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- Christina Pikas
@Bob, I agree, it's probably somewhat confusing because it's not a real blogpost, just a copy/paste conversation. But I had put some time into these replies and felt more than just the recipient should have a chance to argue against them.
- Björn Brembs
@Christina: I had no idea about that last point. I stand corrected. Where I worked there always just was "the" library.
- Björn Brembs
Goodness, yes. MPOW has the "General Library System," to which neither the law library nor the engineering library nor the health-sciences library, three of the biggest and most influential libraries on campus, belong.
- D0r0th34
Current Biology - Cellular and Network Mechanisms of Operant Learning-Induced Compulsive Behavior in Aplysia - http://www.cell.com/current...
wow.. this paper is exactly what I was looking for, thx
- Christopher Harris
Romuald is a great guy, btw! My predecessor in Jack Byrne's lab and developer of the whole Aplysia operant conditioning paradigm. A genius and an artist with the electrodes!
- Björn Brembs
How did the "show of hands" experiment work out with this audience?
- Bill Hooker
In the first presentation (Charite university hospital Berlin), little more than half the people (graduate students, post-docs, young faculty) used the IF. In Potsdam, the audience was much younger, undergraduate students, and they had barely heard of the IF (but they now will never trust anybody who touts it, believe me! :-)
- Björn Brembs
@Bjoern: the copyright notice at SlideShare says "all rights reserved"; is there a way to replace that with, say, a CC-BY license?
- Bill Hooker
Slide 43 update: the DOAJ now lists 4227 journals.
- Bill Hooker
@Bill: no idea about the license, I'll look into it. And of course I'll update the DOAJ number before I give the talk on Monday and Tuesday. Thanks!
- Björn Brembs
Just click "edit privacy settings" to the right of your presentation (under More Info); you can set a CC license there.
- Neil Saunders
You can change your default copyright settings for all uploads...however, it doesn't work for bulk uploads. I submitted a bug report about this twice but as far as I know they haven't fixed it.
- Steve Koch
Just a note that I think some of the images used are CC-BY-SA which means you should use that option for the slideset I think (unless we want to get into arguments about where the derivative work starts and finishes...)
- Cameron Neylon
Very slick presentation. You have great design chops! Oh, and the content is great too.
- Bosco Ho
Changed the license. Wasn't even aware of it. Oh, and if anybody finds that I used pics/slides without attribution, I'd attribute them right away. I know I'm too sloppy in this...
- Björn Brembs
That's one of the reasons I make my stuff Pub Dom -- so no one ever has to worry about attribution!
- Bill Hooker
Consciousness and Cognition, Vol. In Press, Corrected Proof Ecological and sensorimotor theories of perception build on the notion of action-dependent invariants as the basic structures underlying perceptual capacities. In this paper we contrast the assumptions these theories make on the nature of perceptual information modulated by action. By focusing on the question, how movement specifies perceptual information, we show that ecological and sensorimotor theories endorse substantially different views about the role of action in perception. In particular we argue that ecological invariants are characterized with reference to transformations produced in the sensory array by movement: such invariants are transformation-specific but do not imply motor-specificity. In contrast, sensorimotor theories assume that perceptual invariants are intrinsically tied to specific movements. We show that this difference leads to different empirical predictions and we submit that the distinction between...
- Björn Brembs
"Obviously, any sort of peer-review is also set to profit tremendously from such collaborative editing - isn't that one definition of peer-review?" agree :-)
- Claudia Koltzenburg