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Quote from inside the wiki: "Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas." - Bronwen Dekker
hydroxyapatite (HAP) :)
Addgene is a non-profit plasmid repository http://www.addgene.org/pgvec1 Does anyone here use it?
Facile radiolabeling of monoclonal antibodies and other proteins with zirconium-89 or gallium-68 for PET imaging using p-isothiocyanatobenzyl-desferrioxamine http://www.natureprotocols.com/2008...
Our network protocol came out third in a google search for "zirconium 89"!! - Bronwen Dekker
Carbohydrate-Active enZymes database http://www.cazy.org/
A quote from inside: "describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds" - Bronwen Dekker
Inversion and retension... http://www.cazy.org/fam... - Bronwen Dekker
I also get anxious when I find that there are whole spectroscopic ideas that I have not ever heard of... Mössbauer spectroscopy http://en.wikipedia.org/wiki...
Dictionary of protein secondary structure http://swift.cmbi.kun.nl/gv...
A quote from the homepage in explanation: "The DSSP program was designed by Wolfgang Kabsch and Chris Sander to standardize secondary structure assignment. DSSP is a database of secondary structure assignments (and much more) for all protein entries in the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP entries from PDB entries. " - Bronwen Dekker
Structures and mechanisms of glycosyltransferases http://glycob.oxfordjournals.org/cgi...
There are an awful lot of them, what! - Bronwen Dekker
Click Chemistry at the Curly Arrow (blog post from last year this time) http://curlyarrow.blogspot.com/2008...
A review by the Sharpless group - Click Chemistry: Diverse Chemical Function from a Few Good Reactions http://www3.interscience.wiley.com/cgi-bin... - Bronwen Dekker
Another worthwhile review: Click chemistry beyond metal-catalyzed cycloaddtion http://www.schubert-group.de/Becer_a... - Bronwen Dekker
Hoorah, Thanks to Graham, I am an googlewave. :)
Worldwide Protein Data Bank http://www.wwpdb.org/
A quote from inside an announcement (2003) from Nature Structural Biology: "... three organizations have formed a collaboration to oversee the newly formed worldwide Protein Data Bank (wwPDB; http://www.wwpdb.org/). The Research Collaboratory for Structural Bioinformatics (RCSB), the Macromolecular Structure Database (MSD) at the European Bioinformatics Institute (EBI) and the Protein Data Bank Japan (PDBj) at the Institute for Protein Research in Osaka University will serve as custodians of the wwPDB, with the goal of maintaining a single archive of macromolecular structural data that is freely and publicly available to the global community." ... http://www.nature.com/nsmb... - Bronwen Dekker
Decoys 'R' Us http://dd.compbio.washington.edu/ (computer generated conformations of protein sequences)
I feel anxious every time I see an ftp site.
Optimized design and assessment of whole genome tiling arrays http://bioinformatics.oxfordjournals.org/cgi...
Example quote from inside: "first, several properties affect the performance of the probes during the hybridization experiment including probe melting temperature and probe self-hybridization potential (Bloomfield et al., 2000). Second, the manufacturing of the arrays requires specific chemistry which may damage longer probes and renders certain nucleotide sequences difficult to accurately manufacture (Lockhart et al., 1996)". These things are always more complicated than they seem at first. :) - Bronwen Dekker
Chromatin immunoprecipitation at the Haber lab (Brandeis) http://www.bio.brandeis.edu/haberla...
15 Evolutionary Gems: http://www.nature.com/nature...
Every Christmas the Dekker household has its annual Creation vs Evolution argument*. This year, I plan to swat up! *This is followed by the "interaction" about whether the previous "interaction" was a discussion, a debate, an argument, or a fight. - Bronwen Dekker
Not an argument (etc) between B and Alain I take it, but between more extended family? - Maxine
Extended family. :) - Bronwen Dekker
;-) - Maxine
chemistry at nature dot com - http://network.nature.com/people...
A wobbly understanding of relaxation dispersion NMR - http://network.nature.com/people...
Addgene: "Addgene is a non-profit organization dedicated to making it easier for scientists to share plasmids." http://www.addgene.org/pgvec1...
CLICK, SAMBA, TANGO, PRIMA, FAME, MATISSE, EXPANDER! http://acgt.cs.tau.ac.il/expande...
Stem Cell Series at Nature Protocols - http://network.nature.com/people...
A swine flu image that amused me... http://news.bbc.co.uk/nol...
MSO 2009 has come to an end. http://www.boardability.com/ I enjoyed watching games this weekend, but was disappointed that the turnout was so low...
When I explored the website, I found that I had a profile! http://www.boardability.com/profile... - Bronwen Dekker
Vacancy for Chief Editor at Nature Protocols! http://www.nature.com/naturej...
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