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Bora Zivkovic › Comments

Steve Koch
A Differential Effect of Heavy Water on Temperature-Dependent and Temperature-Compensated Aspects of the Circadian System of Drosophila pseudoobscura — PNAS - http://www.pnas.org/content...
1973 study of D2O on circadian rhythms. A good quote from introduction: "Many subsequent studies, the most important of which are those of Suter and Rawson (2) and Enright (3), indicate this effect of D20 is widespread: it lengthens r in unicellulars (1), green plants (4), isopods (3), insects (Caldarola, in preparation), birds (5, 6), mice, and hamsters (2, 5, 7, 8). The effect is clearly widespread and since no exceptions have been found in 12 cases, it is likely to be truly general. As several authors have noted, it therefore merits closer study as a potential clue to the physical nature of the cellular oscillation responsible for circadian rhythmicity." - Steve Koch
@Bora, here's one for you! - Steve Koch
This paper has a fantastic introduction that succinctly reviews all the ways in which deuterium can affect enzymatic properties. I haven't looked at any of the papers it cites, but the way in which they outline it is very much in line with what I've been thinking now. - Steve Koch
Oh yes, this one is a classic in the field. - Bora Zivkovic
Gotta like every drosi paper on FF :-) - Björn Brembs
Thanks for letting me know it's a classic, Bora! I'm not surprised, but on the other hand, it's only been cited 7 times this century...and 40 times over all...what's with that? - Steve Koch
Science in the long run
Science Literature - The story behind Darwin's warm little pond - http://www.arn.org/blogs...
ah, what sophistry! - Bora Zivkovic
Bora Zivkovic
Fwd: The podcast of the Skeptically Speaking radio show is now up: http://skepticallyspeaking.com/episode... #SITT #scio10 (via http://friendfeed.com/coturni...)
Nice one Bora. Man, there's gonna be free beer&wine at #scio10 - YAY. And looking for a bigger venue for 2011. Gosh, that's v. encouraging :) - Graham Steel
Some will be free, some will be a very good deal, still negotiating with sponsors etc. too early in the game. - Bora Zivkovic
Bora Zivkovic
Have you shared this with Brady and the Ignite crew. I am sure they'll be happy to know - Deepak Singh
We should - gotta put that on the To Do list.... - Bora Zivkovic
Cameron Neylon
Reflections on Science 2.0 from a distance - Part I - http://blog.openwetware.org/science...
Interesting point - could only track down Jon's tweet via Friendfeed. Possibly an argument for piping mine back in - or perhaps setting up a secondary account for archiving... - Cameron Neylon
a secondary acct for archiving is a good idea.We tend to pull the RSS from tags on the day of any event and stick them in FF or google reader. Having an RSS feed of your own tweets into GR could work too. Tweetstream is definitely pretty transient these days. - Jo Badge
I use FF as a searchable repository of my tweets, at least for now. - Bora Zivkovic
The third para of that post was delightful. I also use FF exactly as Bora does, and to search for the tweets of some others. In fact I've toyed with setting up 'imaginary friends' of people / corporate tweets which don't have an FF account for this purpose but haven't got round to it yet. I really don't use FF enough! - Jo Brodie
Love it: "...the natural unit of science research is the blog post". - Bill Hooker
Björn Brembs
I have 12 Google Wave invites - who wants one?
Hmmmm. I'm begging for one ^_^ - Cassie peakie
Oh, and you'll have to leave your email, or I can't invite you... - Björn Brembs
cinnamonstyck@gmail.com<-----me - Cassie peakie
I'd like one! organelas at gmail dot com - Bruno C. Vellutini
Yes please! gray.noah at gmail dot com - Noah Gray
edmund.dipple@btinternet.com much appreciated! - Edmund Dipple
please send me an invite... ms.ashley88 at gmail dot com it would be greatly appreciated! - Laura
Ok, there's one left, everyone who contacted me so far got one - Björn Brembs
on my knees for one dahaniel at googlemai dot com :) - Dahaniel
Done, all gone! - Björn Brembs
was i able to get one? - Laura
Wow, that was quick, less than 10 minutes... - Björn Brembs
and me? - Dahaniel
:D - Dahaniel
Nice social experiment - Egon Willighagen
@Laura and Dahaniel, yes you're on the list - Björn Brembs
thank you so much!! - Laura
I'm watching my inbox with sad, hopeful eyes....^_^ - Cassie peakie
thanks! lucky me that I stayed for the Vodka session in our lab, otherwise I would have missed it :) - Dahaniel
I thought I'd set this off and then check in the morning. Good I waited for a few minutes... - Björn Brembs
yes please - simoncoles@gmail.com - Simon Coles
did you send them already? nothing in my inbox or in spam... - Dahaniel
All the emails are now with Google. I have no idea when they'll send the accounts out. Last time around, it took a couple of weeks. - Björn Brembs
Thanks Björn!! Just got in.. - Bruno C. Vellutini
Thanks Björn; just got mine today... - Noah Gray
Anyone else still need one? I have about 12 left. - Carl Fulp
I could use one, please -- PeterAtOhioLINK@gmail.com - Peter Murray
OK, Peter, you've been invited. - Carl Fulp
Carl - I could use one, if you have any free - simoncoles@gmail.com - Simon Coles
OK, Simon, you've been invited. - Carl Fulp
Many thanks, Carl. - Peter Murray
I have 15 or so left. - Brian Krueger - LabSpaces
dupuisj@gmail.com if anyone has an invite left. Thanks! - John Dupuis
If anyone has any left: bentleywg@gmail.com . Thanks! - Betsy (bentley) Vera
I invited you John - Christina Pikas
@christina, I did too :P Got one for you too Betsy. - Brian Krueger - LabSpaces
For everyone here, feel free to invite me (whatever that means): gray.noah@googlewave.com - Noah Gray
May I have one too? pawel at FreelancingScience com - Pawel Szczesny
Yeah, feel free to add me to your contacts... brian.j.krueger@googlewave.com - Brian Krueger - LabSpaces
Brian: Thanks! (c'mon, gmail) - Betsy (bentley) Vera
I invited you, Pawel. - Carl Fulp
Thanks Carl! - Simon Coles
I lost track, if there is still some invites in the mix, but if so, feel free to invite the olchemist at gma!l dot çom - Oliver Schuster
ppl, I have several invites, if anyone needs. Just invited you, Oliver. - Bruno C. Vellutini
I've received my invite, but how does one get invites to give away? Did I miss a message somewhere? - Mickey Schafer
that is also my question. I got invited quite a while ago, playing a little, but could not find a way to invite others? - Bora Zivkovic
have yet to receive an invite :( - Christopher Harris
I think those who received the invitation from Google itself got 20 invites to give (there is a wave with them). People invited by a regular user that had invitations can't invite others. - Bruno C. Vellutini
Carl, invite just came. Thanks a lot! - Pawel Szczesny
Carl, my invite just came through - thanks! - Simon Coles
hey anyone have an invite i desperately want one Cyberfennec (att )gmail(d 0t)c0m - keegan maloney
Wayne Sutton
The challenge: inbox zero by Monday morning. - The Obstacle: 5,780 emails with 4,133 unread. - Gear: Coffee & Spotify. When do I start? Now!
*gasps* - Anika
Update: 5709 emails with 4087 still unread - need to speed up the pace! - Wayne Sutton
just filled out my Peoplepond profile due to verification email. http://www.peoplepond.com/waynesu... back to kung fu - Wayne Sutton
to many emails require me to click on something, I guess that's the purpose - Wayne Sutton
darn safari crashing slowing up my process - Wayne Sutton
Glad time is going back an hour, that means it's only 12:14!! - Wayne Sutton
Crazy, one email caused me to create a google form, a google doc and edit two pages on a blog.... :( - Wayne Sutton
That's one should have been put into the "Get to it LATER" file. - Anika
I wish, it was one I had to deal with because it affected other emails that I have to deal with - Wayne Sutton
Update: 5,255 emails - 3,752 unread... :( - Wayne Sutton
This is me not complaining about the 1500 emails I have. ---> *drinks MORE wine* - Anika
#VampireMode is in full effect! - Wayne Sutton
crap! found a very important email ....fail, fail, fail - Wayne Sutton
I hope you have some Red Bull. - Anika
...i'ma let you finish that, but I thought I had the craziest inbox of all time... apparently not. .LOLz! - .LAG liked that
.Lag, funny - Wayne Sutton
No Red Bull but about to get some more coffee - Wayne Sutton
Nice, I sat still and just went back in time! - Wayne Sutton
You must be part cyborg. Here I am all the way on the west coast, ready for bed. You're still working. - Anika
a VampireCyborg FTW - Wayne Sutton
Ok, I'm done for the night, going to set the clocks and call it a night - Wayne Sutton
Night one update: 4,631 emails with 3,300 unread :( - Wayne Sutton
Good afternoon, back to the email grind. 4,595 emails with 3277 unread, - Wayne Sutton
Yesterday it was spotify today its Pandora with the shabba ranks channel! Rudeboy! - Wayne Sutton
I tell you Housecall never gets old... Shabba! - Wayne Sutton
Here comes the HotStepper! - Wayne Sutton
I'm the lyrical gangsta! - Anika
Break time! need a warm cup off coffee - Wayne Sutton
Update: 3,270 emails - 2,371 unread - Wayne Sutton
It's easy. Declare bankruptcy. - Kevin Gamble
I can't do it Kevin... I want to but need to scan through the chaos - Wayne Sutton
Lunch break, - Wayne Sutton
When you do this, do you start by the oldest emails first or by whatever is on top? - Anika
what's on top, back to the choas! - Wayne Sutton
Found a beta invite to http://www.threadsy.com in my inbox FTW.. :) - Wayne Sutton
They want your email password. :( - Anika
I keep seeing invites to join: echowaves.com anyone using it? - Wayne Sutton
Glad you got to my messages - better late than never ;-) - Bora Zivkovic
HA! yes Bora :) - see that's why I can't just declare email bankruptcy - Wayne Sutton
time to switch music, had enough reggae today! - Wayne Sutton
Update: 1,951 emails with 1,421 unread emails. going to take another break at 5pm, lets go! - Wayne Sutton
Damn man, that's bigger than my Google Reader unread count! - Slippy "Threadsbane" Lane
to much traveling the past few weeks, a lot of it is, linkedin, pitches, facebook, newsletters, etc :( - Wayne Sutton
Funny I think most of my email responses are in 140 characters or less :) - Wayne Sutton
Found another beta invite, this time for a site called: http://www.popscreen.com - Wayne Sutton
another beta invite: http://www.clicker.com - Wayne Sutton
Update: inbox 1,336 emails - unread 981 - almost there! - Wayne Sutton
Break Time though :( - Wayne Sutton
Just watched a good movie with wife, going to make a peanut butter and jelly sandwich and back to inbox zero! should be done by 10pm or sooner. What do you think? - Wayne Sutton
dear people of email, please do not write any emails that has more than 2 paragraphs - Wayne Sutton
3 paragraphs to me; 1 sentence back... and thats an action item. short and to the point. - Wayne Sutton
You'd hate getting emails from my husband. He writes books. - Anika
time for some Michael Jackson. Spotify has the This is it album online ...hoooooooo - Wayne Sutton
Beta invite #4 to a site called: https://www.lifeio.com anyone using it? - Wayne Sutton
So close! 459 emails with 379 unread - Wayne Sutton
almost there and losing focus - Wayne Sutton
*waves pom-poms* You can do it! You can do it! You know you can! - Anika
41 emails with 24 unread! This is it! - Wayne Sutton
Dude this is intense. How'd it build up like this? (hint: try filters) - Maxamad (Amazigh)
Inbox Zero 1 hr before my goal.. thanks for the comments and putting up with me, lol - Wayne Sutton
I need a computer break now... slowly stepping away from the keyboard - Wayne Sutton
Way to go man - Maxamad (Amazigh)
thanks, I have a headache - Wayne Sutton
wow - congratulations! I haven't been at Inbox Zero in something like 5 years. But I try to get down to Inbox 20 every night before bed. At Inbox 22 right now. Two to go. - Bora Zivkovic
Inbox 16, but all of those require a lot of work - e.g., instructions for writing a paper and such...have to leave them for later.... - Bora Zivkovic
wow Bora, 5yrs? but I understand, I have a few action emails and some assigned to do later - Wayne Sutton
or you could just set up a new acct! i have about that many and if I could figure out how to easily fwd emails that I want (only) to it, I would just dump the old one:)! good luck! - Heather O'Sullivan Canney
Great going, keep us posted on how you did it or how you progressed... - TrafficBug
how I did it? Simple: delete, archive, delete, reply, delete more - Wayne Sutton
Bora Zivkovic
I, for one, love the Realtime Feed on Facebook - it's just like FriendFeed and why I love it. Amused by Fb-ers who are rebelling.
we still need a 'ban all idiot applications flooding the feed' button. i have more than 50 banned, but new ones pop up every day, and sometimes i can't see if something at least slightly interesting was posted. - Endre Sebestyen
LOL. I just go to FB once a day, usually late at night, and click on all the "Ignore" buttons for all the invitations to silly apps. - Bora Zivkovic
Pawel Szczesny
Is anybody coming early to the conference? I'll be there already on Wednesday afternoon.
Hmmm, perhaps ask that question on the 'carpooling and room-sharing' page on the wiki. At least some locals may be interested. Perhaps you can visit Carrboro Creative Coworking space. Or do some other science-y stuff: http://scienceblogs.com/clock... - Bora Zivkovic
Possibly, as I have family in the area. Haven't worked out my own schedule yet. - D0r0th34
I was going to fly in on Thursday this time... I may try to switch to Wednesday though. I will let you know as we get closer to the date. - Bill Hooker
<sniffs> yet again, I won't make it in person :-( - Graham Steel
Bora Zivkovic
Fwd: Coming to #scio10? Start signing up for Workshops: http://www.scienceonline2010.com/index... just edit that wiki page, add number and your name. (via http://friendfeed.com/coturni...)
Is it just the two one-hour workshops we need to sign up for? - Steve Koch
Yes, choose one 10am and one 11am workshop to attend - Bora Zivkovic
Bora Zivkovic
Dunbar number is not what you think it is - Seth does not grasp it: http://sethgodin.typepad.com/seths_b...
"tag: Dunbar" - Bora Zivkovic
Bora, are these points what your getting at: http://phasinggrace.blogspot.com/2007... ? - Micah Wittman
Yes - that's a good one. There were a couple of other critiques, notably one by danah boyd. And even Dunbar himself is smarter than this and said that his number does not apply to the online world. Search FF for tag: Dunbar - I've been collecting these, hoping one day to find time to write a blog post about it. - Bora Zivkovic
Bora Zivkovic
Fwd: If FriendFeed does not die by then, we'll use this Room for live coverage of #scio10: http://friendfeed.com/science... if not - GoogleWave? (via http://friendfeed.com/coturni...)
FF has been really sluggish lately. Perhaps everyone at the conference will have access to Google Wave by January? - Bora Zivkovic
Not a gambling person, but at a reasonable guess, I would guess that for circa Jan 2010, (unless hit by meteorite), FF will remain stable, as matters stand. As such, live-coverage via this FF room remains choice #1. As matters stand, I think that it might be not unreasonable to say that #wave might/could be a more interesting alternative, but I don't currently see this as being a viable option for #scio this year. Next year?? - Graham Steel
Oh the irony ;-) I composed my comment before Bora although I was boiling Tortellini during the process. I plead "I wuz cookin'" - Graham Steel
I suppose a robot could be used to copy content to / fro friendfeed and wave? - Steve Koch
If friendfeed's not around, someone better get cracking on a better client for Wave, because otherwise it's going to be unfollowable. - Mr. Gunn
David Bradley
Coming to Twitter: Create Sharable Lists of Users - http://www.readwriteweb.com/archive...
Could the scientwist list become "official"? #science Should we start a campaign? http://j.mp/4t1ErO HT @BoraZ [from http://twitter.com/science...] - David Bradley
@BoraZ Perhaps it should be coupled with that at http://sciencepond.com/ somehow? - Daniel Mietchen
I now have access to Twitter lists, it doesn't look like there's an easy way to import the scientwist list...need someone with API skills... - David Bradley
the issue with lists is you can only add people you follow, and lists are owned by individual users - Richard Akerman
you can add people you don't follow to your lists - Bora Zivkovic
I assume there is a large overlap between David's list and http://sciencepond.com/ list. Is there anyone on http://sciencepond.com/ that is NOT also on David's list? It is unfortunate, but the Twitter lists have to be built manually (for now, at least). It's a pain, but once done, lists are amazingly useful. - Bora Zivkovic
Bora Zivkovic
From the comments, @brembs: "I found the best advice to be that you spend as much time in the lab as you *like*. If the lab pulls you out of bed in the morning and you have to find some activity (sports, music, friends) to drag you out of it in the evening, you’ll be fine. If some clock rules your lab hours, something is wrong." --hands-down the best advice to an intending grad student that I have ever seen. - Bill Hooker
Funny how I liked that comment the best myself. - Bora Zivkovic
Mind the caveat, though: today, there are fields which are ruled by the clock and their number is growing. - Björn Brembs
Is any job a 9-5? None I've worked at - Deepak Singh
I think this is correct to a degree. You have to be in the lab for as long as your experiment requires, I often had 14 hour experiments to do. Your experiments dictate your time, but then you plan your experiments and your day/week/month in line with this. If you have worked 50 hours in the first 3 days of the week and your experiment is finnished, then you stop working for the rest of the week - Frank
Well, my inner clock works me more like 10-7 but I believe 9-5 is plenty if you WORK. Much better than hanging around day and night to be seen by the supervisor, but doing nothing. You have to be able to cope with the 24-7 folks' comments though... - Oliver Schuster
Bora Zivkovic
RT @timoreilly "Social Web feels 'a bit like Back to the Future' for people who have a long history with the Internet." http://radar.oreilly.com/2009...
The concept of "tacit knowledge" is very interesting. - Mickey Schafer
Oh yes: http://en.wikipedia.org/wiki... I use it all the time when explaining to people why they should post comments on papers - to preserve the tacit knowledge to the next generation - Bora Zivkovic
That's a nice point, Bora. I will use that to encourage students to participate more. Also explains why reading comments is important. - Mickey Schafer
Howard Weaver
RT @base10: @howardweaver There's annual conf. in Jan of ~250 scientists educators and bloggers in the Raleigh area talking Open Access etc.
Yup - and there's a FF room for it: http://friendfeed.com/science... - Bora Zivkovic
Bora Zivkovic
Love it when #PLoS papers get re-used on YouTube: http://www.youtube.com/watch...
Love it when #PLoS papers get re-used on YouTube: http://bit.ly/D9XRJ
Play
Absolutely, and wouldn't it appropriate for this user-generated video to be linked directly to the Manu. in question. Wait? Holy Spiderz... how did this happen :-) http://www.plosone.org/annotat... - Graham Steel
LOL! - Bora Zivkovic
Nice one Graham. - Bill Hooker
Alerted the author who said:- "Thanks, a already saw the video. Not sure I understand. Who made it? Matjaz". NACProductions1 based in the UK I think, was my reply. - Graham Steel
I had wondered whether it was anything to do with this business model: http://www.wired.com/magazin... - Peter Binfield
Seems like a reasonable call, Pete. - Graham Steel
Excellent number of views though (considerably more than the paper itself has...) - Peter Binfield
Actually, I take that back! I last looked at the paper yesterday, since which time it's views have increased by about 26,000! - Peter Binfield
Wow - that's good :) I've emailed the person who uploaded the video and asked them to consider placing a link to the PLoS ONE Manu in the video information tab... ++UPDATE++ they now have. xlnt !! - Graham Steel
Okay, so Florida is not such an exotic location, but our banana spiders (golden-orb) spin huge webs, and I've had to scramble to avoid walking into web that spanned 5-6 feet. - Mickey Schafer
Interesting, Mickey. We might need to consult with these guys for further input:- http://is.gd/4xTHT ;-) - Graham Steel
These are pretty well-known spiders here (the golden orbs; there is a brazilian banana spider that is actually horribly toxic) -- I leave their webs up all around the house because they eat grasshoppers like crazy -- have had them riding on my shoulders when clearing brush, and once on my calf...turns out they have very velvety-feeling undersides, and are the only spider that doesn't make me want to run screaming to someplace like Antarctica. "2 Princes"? One of my favorite tunes! - Mickey Schafer
Spinning (sorry) back to PLoS EVERYONE from 2 days ago, it's worth tying in the post Worth a Thousand Threads http://everyone.plos.org/2009... into this one. Having re-read it, I see that there is a somewhat sombre note to this discovery and I must pass on my regards to Dr Matjaž Kunter in respect of the sad loss of their best friend Andrej Komac who died in an accident at the time of the discoveries. This I have now done. - Graham Steel
Bora Zivkovic
John Wilbanks: I have seen the paradigm shift, and it is us: http://research.microsoft.com/en-us...
great read -- at least three lines that belong in "quotes" for great writing lists! - Mickey Schafer
which three? can you copy and paste here for everyone to see? - Bora Zivkovic
Sure, Bora, but my selections have more to do with aesthetic reaction than information -- things that made me laugh or just go "yeah, that was nicely put." - Mickey Schafer
#1: "I can encode a lovely simulation on my screen in which there is no theory of gravity, but if I attempt to drive my car off a cliff, empiricism is going to bite my backside on the way down." - Mickey Schafer
#2 (this is for the info, too) "Data is not sweeping away the old reality. Data is simply placing a set of burdens on the methodologies and social habits we use to deal with and communicate our empiricism and our theory, on the robustness and complexity of our simulations, and on the way we expose, transmit, and integrate our knowledge." - Mickey Schafer
#3 "Changing the public nature of the Internet threatens its very existence. This is not intuitive to those of us raised in a world of rivalrous economic goods and traditional economic theory. It makes no sense that Wikipedia exists, let alone that it kicks Encyclopedia Britannica to the curb." - Mickey Schafer
#4: "As Galileo might have said, however, “And yet it moves.” [6] Wikipedia does exist, and the network—a consensual hallucination defined by a set of dry requests for comments—carries Skype video calls for free between me and my family in Brazil." (part of my appreciation for this derives from my trip to Rome, where I caught the Galileo exhibit at the Santa Maria del Angieli) - Mickey Schafer
Love them all - all four. Thank you. - Bora Zivkovic
#5: "Software built on the model of distributed, small contributions joined together through technical and legal standardization was another theoretical impossibility subjected to a true Kuhnian paradigm shift by the reality of the Internet. The ubiquitous ability to communicate, combined with the low cost of acquiring programming tools and the visionary application of public copyright licenses, had the strangest impact: it created software that worked, and scaled." - Mickey Schafer
Guess I can't count 'cause there's one more: #6 "Eben Moglen provocatively wrote in 1999 that collaboration on the Internet is akin to electrical induction—an emergent property of the network unrelated to the incentives of any individual contributor." -- this one in particular helps provide a frame for understanding what happens "out here" -- I think this is what I try to get across to students. - Mickey Schafer
Bora Zivkovic
@Scobleizer scientists are using FF a lot, especially for liveblogging conferences in Rooms/Groups. I don't see any of them leaving soon.
Bora, great point. The activity in private rooms--even rooms in general--is under the radar. - Micah Wittman from iPhone
Unfortunately there's nowhere to go. Nothing has FF's functionality, and the stuff being added to Twitter isn't going to close the gap significantly. Wave has some potential in time. - Kevin Gamble
I still feel that Wave is orthogonal to FF in terms of its native functionality. You could build something in Wave but not sure that it would work neatly. The key success here in FF has been the way that communities have come together and that people can come in from the outside via search. We may simply have to build or adapt something for ourselves. - Cameron Neylon from twhirl
Again: I'm not saying that FriendFeed will go away. Just that its growth will stagnate for a period and then it'll either see growth because of new microcommunities like yours that find it useful or something else will come along that enables new communities and you all will go there. Either way, FriendFeed's "death" is due to the fact that they aren't working on it anymore. - Robert Scoble
I agree with Micah. I've been here, but not using/posting much to my main feed. - Tendonitis' Bitch
Bora: To Robert's point, seems to me a mature Wave might end up being better for that than FF. - Christopher A Carr
I agree with Robert - his post is reasonable. I am mostly reacting to http://www.techcrunch.com/2009... and the reactions to that. Too doomsdayish. - Bora Zivkovic
only the immortal are changeless. - Joe Silence is not dead
Cameron Neylon
Nature Communications: A breakthrough for open access? - http://blog.openwetware.org/science...
Will our institutional subscription receive retroactive discounts for lots of open access content? I'm guessing that will be a big no. - Jenny Reiswig
I could be wrong but would see it mostly as mostly profit driven. PLoS ONE is showing the the most sustainable way to publish high quality open access is to have a base that publishes a lot more of more specific content that is not reviewed on perceived impact. If I was any other publisher (aside from PLoS and BMC) I would be concerned about this move to cover this broad base. How many... more... - Pedro Beltrao
I think Pedro has it right. - Bill Hooker
persuasive analysis, Pedro, thanks - D0r0th34
Exactly, Pedro! - Björn Brembs
I'm a bit confused as to why communications or letters journals are coming out now. I blogged this last time I had reliable Internet at home. & +1 for Pedro's take - Christina Pikas from iPhone
Pedro, I think that is kind of the point I was trying to make. If N Comms goes for volume they will be accused of diluting quality - and devalue the brand. But if they don't then what is the point? Sure its about profit. But so is PLoS ONE, nothing wrong with that - particularly if it supports good service provisions. But I agree I still think we have too many journals and making more isn't going to help - it just seems all that we are capable of doing at the moment. It will break, sometime soon. - Cameron Neylon
Other thing that I forgot to raise from the Scientist article. Page Limit?!?!?! In an online only journal? - Cameron Neylon
well, there are length-sensitive issues that have nothing to do with typesetting. Copyediting, for instance. - D0r0th34
I was thinking about the page limit thing for digital papers wrt peer reviewing the other day (actually, I seemingly always think about most things from the peer review perspective), but wouldn't a "no page limit" journal be a b*tch to peer review for? Nowadays, the limit is like 10-20 pages per article, right? What if the "no page limit" thing increases that "acceptable standard" to 30-40 pages? That's like twice the content to peer review? Ouch... - Wobbler
Page limits vary a lot from journal to journal. I've occasionally seen extremely dense 100,000 word articles in mathematics. Peer review at the standards expected by mathematicians may take several months of full time work or even more for such a paper. - Michael Nielsen
Wow, really? Amazing. So how does that work exactly? I assume they can somewhat figure out beforehand whether it's worth publishing or not and peer review is there mostly to make sure everything is written down right before they publish it? But with the whole idea of "no page limits", I'm assuming we're also expecting scholars to spend more time peer reviewing longer articles? Or "no page limits" in the sense of "everything else is supplemental, like (raw) datasets for example"? - Wobbler
I figured it would be either trying to contain the time or costs of copyediting and refereeing but again it seems to me to miss the point of the opportunities offered by online only. Anyway doing a Q&A with them to hopefully appear next week so we get some answers - also apparently more information coming with the call for papers next week as well. - Cameron Neylon
I guess one approach of longer articles is for the authors to include a 1 page "summary" of the article and which parts describe what so editors/peer reviewers have an easier time screening for what they think is suitable for their journals or not? I think I read about such an idea before. When articles do get lengthier, I think this idea becomes more feasible. - Wobbler
Well my answer would be to admit that in depth peer review of every paper in a timely fashion is simply not feasible and is in any case unaffordable. If we could admit that and move on then we might make some progress. - Cameron Neylon
fully agreed - so where go next? open post publishing peer review - then why do the (traditional) 'publishing' in between at all? how much 'branding' do readers really need to figure out what they want to read? - Claudia Koltzenburg
I think, on average, lengthier articles create issues with peer review. And to make the problem worse, those articles are also going to be more prone to mistakes (because there's more content in the article). That's two things you absolutely do not want even as separate issues. And with the page limit change they will come in pairs, because they're somewhat mutually inclusive. Then... more... - Wobbler
@Claudia - I think the evidence shows that readers are less and less interested in branding. It is authors that care about it. @wobbler there is clearly a place for comprehensive reviews, but I agree that really length papers probably are mostly data rather than paper and should be treated differently. It would be interesting to know whether there was a correlation between the length of papers and the time referees spend on them. Very difficult to measure accurately though. - Cameron Neylon
@Cameron, yes, agreed, I guess it would be interesting to compare the author/reader overlap in scholarly output/process/input workflows with any other slice of life where two or more such overlapping interest stakeholders are involved in a jousting game - and then see if this gets us new aspects to look at - or indeed to add in Björn's recent one: http://ff.im/9rySu - Claudia Koltzenburg
@Cameron: currently, that seems to be the only type of a lengthier article that would not decrease but increase peer review effectivity and efficiency. All the others are bound to make the (current) certification processes a lot tougher. Oh well, guess something to think about when it happens on a large scale. Maybe, as you've said, we'll have found a good solution for that. - Wobbler
Well, palaeontologists LOVE no page/figure limit because they can finally describe their fossils in detail that is useful to other researchers: http://svpow.wordpress.com/2009... . Also, don't forget that longer papers tend to gain more citations (either because there's more data, or because they are more memorable, or because they are more like reviews). - Bora Zivkovic
just added to the OAD list of research questions the jousting game idea voiced 3 comments further up in this thread, check out the list and add your own: http://oad.simmons.edu/oadwiki... - Claudia Koltzenburg
Bora Zivkovic
In a few days, everyone will be able to see/use Twitter Lists. I am lucky to be one of the first and to be on some remarkable lists already.
I managed to access twitter after 15 hours & still can see only my own tweets - claudia
it's been on-and-off and hiccuppey for me, but mostly working today....I see lots of people have problems. May work better on apps than on the twitter.com site. - Bora Zivkovic
Since I'm one of the lucky few, I guess I ought to make some lists. - John (a.k.a. dendroica)
Scoble's post about Lists is good: http://scobleizer.posterous.com/twitter... I dislike the limit of 20 lists. Already made or following 17 and want more. - Bora Zivkovic
Bora Zivkovic
Fwd: If you are doing a session/demo/workshop at ScienceOnline2010 & do not yet have a description please add it today http://www.scienceonline2010.com/index... #scio10 (via http://friendfeed.com/coturni...)
Thanks Christina - just saw yours, very nice ;-) - Bora Zivkovic
Nancy Shute
@BoraZ Don't ask me; I'm just quoting the lawyer! My sense is the law on editing comments is in flux, to say the least. #sciwri09
certainly in flux now that Fed is a) asking bloggers to reveal conflicts of interest and b) excluding bloggers from the Shield Law. - Bora Zivkovic
Shirley Wu
Posts in the pipeline, and in the meantime - http://shirleywho.wordpress.com/2009...
am particularly looking forward to this one: "The commenting conundrum: about where and why scientists do or don’t comment on scientific articles" - Claudia Koltzenburg
especially looking forward to The commenting conundrum AND the article-level metrics... ;-) - Bora Zivkovic
Bora Zivkovic
What is the best, stablest, most user-friendly FREE wiki?
http://www.wikimatrix.org/ shows quite a few in comparison. I like wikis best that show changes in detail. And I want menues to be availabe in many languages. - Claudia Koltzenburg
two ppl on Twitter suggested MediaWiki - Bora Zivkovic
does Google Sites count? - LogEx
Wikispaces.com has a decent visual editor - no need to learn wikitext at least to get started - Jean-Claude Bradley
@Boraz see also this thread started by @nuin http://friendfeed.com/nuin... - Pierre Lindenbaum
We use DokuWiki here at work, because it has a very low barrier to entry. - Simon Cockell
It really all depends on how big the wiki is going to be an how many users. If it is just a few people and a few 10's of pages then a simple one-file flat-file wiki is the way to go. A few more pages and users ~100 then go for a more complicated flat-file like dokuwiki. If you have 1000s of users and pages then use a database-backed wiki like mediawiki. Also depends on your server environment, e.g. on shared hosting a wiki written in PHP may be easier. - Matt Leifer
I guess about ~50 pages, with a couple of hundred potential users though, as it usually goes, only a handful would really do the editing. - Bora Zivkovic
You may want to investigate MindTouch http://www.mindtouch.com - Micah Wittman
I'd be tempted to go with dokuwiki for that due to the ease of setting it up. - Matt Leifer
make sure that with dokuwiki the extension and maybe also a few more libraries are installed that allow for a detailed visibility of changes - helps users keep their trust in the transparency of the process :-) - Claudia Koltzenburg
+1 for MindTouch, which is based on MediaWiki, it just comes with 'easier' (non-tekki) editing and widgets. - joergkurtwegner
Bora Zivkovic
RT @annamunoz RT @delrayser: Also found in #BalloonBoy's attic box: Obama's Kenyan birth certificate; Ark of the Covenant; George Bluth.
*dead* - Anika
The Lindbergh Baby is probably up in there too. - Anika
with Jimmy Hoffa - D0r0th34
and Waldo and Carmen Sandiego and Holy Grail and the third Moses' tablet and the other half of the Shroud of Turin. And Mowgly. - Bora Zivkovic
Science and Reason Net
I found this a while ago, but no one, to my knowledge, seems to have blogged about it:Real Lives and White Lies in the Funding of Scientific ResearchThe granting system turns young scientists into bureaucrats and then betrays themLawrence PA (2009) PLoS Biology 7(9): e1000197 (open access)Go read the article. It's scary. And seems accurate enough even to an undergrad with limited experience. (Shit, I've been jaded already before even going to grad school...)Within the article is this quote:“Scientists might have had a Hippocratic oath of their own. They might have promised their gifts to mankind. But instead, I have fathered a race of inventive dwarfs who can be hired for anything.”—Bertolt Brecht “The Life of Galileo,” version by David HareTo be fair, doctors aren't exactly saints these days either, being tied up by the madness of insurance policies and a culture that deems it acceptable to SUE(!) a doctor for trying to help a patient. But at least doctors can have their own...
I found this a while ago, but no one, to my knowledge, seems to have blogged about it:Real Lives and White Lies in the Funding of Scientific ResearchThe granting system turns young scientists into bureaucrats and then betrays themLawrence PA (2009) PLoS Biology 7(9): e1000197 (open access)Go read the article. It's scary. And seems accurate enough even to an undergrad with limited... more...
Bora Zivkovic
A paper accepted. Who said I left science? Eh?
Thanks. It's combining avian ecology and physiology, taking my old lab work and testing ideas out in the field for the first time. Accepted by Condor (yes, I wanted PLoS ONE, but I am just the 3rd author here....). Trying to persuade the editor that citing a blog post is OK these days was a challenge... ;-) - Bora Zivkovic
I was wondering if it would be in PLoS - John (a.k.a. dendroica)
I'm amazed, Bora, that you couldn't convince authors 1 and 2 to go PLoS -- are your evangelizing skills slipping up? :) - Benjamin Tseng
why not invite the first two authors here and find out, they may have new arguments for PLoS to improve ;-) - Claudia Koltzenburg
No, we discussed it, it's OK. - Bora Zivkovic
hm, I wonder: what kind of difference does such 'paper accepted'-type of 'publishing' mean to you - (if - why/ how) does it make any difference re blogging (for you)? see also "publish fair trade" http://ff.im/8cGP3 - Claudia Koltzenburg
It's fun. It is nice publishing one's ideas and data when one is NOT in the rat-race for promotions, tenure, etc. I don't have to care what, when, where, how or even if. If it happens, fine, if it doesn't fine, too.. A very pleasant nonchalance about the whole process - nice to be able to afford it. - Bora Zivkovic
"not in the rat-race for promotions" Ah, the pleasures of liberty. Congrats and best wishes for more acceptances like this. - Polly Potter
@Claudia -- my position as a lecturer doesn't require research either, though in my unit, we earn "merit" pay for activities outside our job descriptions (those that contribute to the university, unit, community, etc). One of the unanticipated rewards of learning about the science/web2.0 community has been space for doing research again --and being willing to make time for it --... more... - Mickey Schafer
"nonchalance about the whole process" - would this liberty contribute to whatever me might figure out we can call "fair trade" publishing? http://ff.im/8cGP3 - Claudia Koltzenburg
Only you think that ....we all believe in your sci work! - Ana Ivkovic
Nice! Be sure to blog about your own paper :-) - Björn Brembs
David Chan
@jayrosen_nyu mindcasting? did you just make that up? either way I'm stealing it, changing it to thoughtcasting and making it my own
Jay invented it but months ago: dig through the months of this search: http://friendfeed.com/search... - Bora Zivkovic
♥ Stephiepooos ♥
why have so many people been saying "this is my first day on the internet""
Must be true. Who would post such a thing, I mean, really? - Josh Haley
i dont understand it. i have seen atleast 15 people with it in their feeds :S - ♥ Stephiepooos ♥
That's just nutso! - Josh Haley
agreed :P - ♥ Stephiepooos ♥
Wow, weird! :D - Rochelle
ffundercats? - (jeff)isageek
that's crazy - Mark Wilson
What a bunch of nutcases. - Akiva Moskovitz
I'm thinking ffundercats. - Mathew™ one of a kind
the meme of the day, in place of "show your boobs" - Bora Zivkovic
:D Wheeee! - Josh Haley
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