Cytoscape

Proteomic and Functional Analyses Reveal the Role of Chromatin Reader SFMBT1 in Regulating Epigenetic Silencing and the Myogenic Gene Program. Lin  et al, J Biol Chem. 2013 Mar 1;288(9):6238-47. - http://cytoscape-publications.tumblr.com/post...

Centiscape available for Cytoscape 3.0! - http://groups.google.com/group...

Unexpected Diversity during Community Succession in the Apple Flower Microbiome. Shade  et al, MBio. 2013 Feb 26;4(2). Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Functional profiling discovers that the dieldrin organochlorinated pesticide affects leucine availability in yeast. Gaytan et al, Toxicol Sci. 2013 Jan 28. - http://cytoscape-publications.tumblr.com/post...

TFEB regulates lysosomal proteostasis. Song et al, Hum Mol Genet. 2013 Feb 18. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Complementary detection of embryotoxic properties of substances in the neural and cardiac embryonic stem cell tests. Theunissen et al, Toxicol Sci. 2013 Mar;132(1):118-30. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

MosaicFinder: Identification of fused gene families in sequence similarity networks. Jachiet et al, Bioinformatics. 2013 Jan 30. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana. Giorgi et al, Bioinformatics. 2013 Feb 1. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Host Cell Factors Necessary for Influenza A Infection: Meta-Analysis of Genome Wide Studies. Capitanio et al, Quantitative Biology, Cell Behavior. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Host Cell Factors Necessary for Influenza A Infection: Meta-Analysis of Genome Wide Studies. Capitanio et al, Quantitative Biology, Cell Behavior. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

An information-gain approach to detecting three-way epistatic interactions in genetic association studies. Hu et al, J Am Med Inform Assoc. 2013 Feb 8. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

X-linked dystonia parkinsonism syndrome (XDP, lubag): disease-specific sequence change DSC3 in TAF1/DYT3 affects genes in vesicular transport and dopamine metabolism. Herzfeld et al, Hum Mol Genet. 2013 Mar 1;22(5):941-51. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Next-Generation Sequencing of Small RNAs from HIV-Infected Cells Identifies Phased microRNA Expression Patterns and Candidate Novel microRNAs Differentially Expressed upon Infection Stewart et al, mBio Feb 5, 2013. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Identification of Novel in vivo MAP Kinase Substrates in Arabidopsis thaliana Through Use of Tandem Metal Oxide Affinity Chromatography. Hoehenwarter et al, Mol Cell Proteomics. 2013 Feb 1. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Cytoscape core projects are now hosted at GitHub - http://groups.google.com/group...

Unbiased label-free quantitative proteomic profiling and enriched proteomic pathways in seminal plasma of adult men before and after varicocelectomy. Camargo et al, Hum Reprod. 2013 Jan;28(1):33-46. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Visualizing multidimensional cancer genomics data. Schroeder et al, Genome Med. 2013 Jan 31;5(1):9. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

BIG NEWS ABOUT CYTOSCAPE -- v3.0 is released! - http://groups.google.com/group...

CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data. Bindea et al, Bioinformatics. 2013 Jan 16. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

DNA methylation profiling in breast cancer discordant identical twins identifies DOK7 as novel epigenetic biomarker. Heyn et al, Carcinogenesis. 2013 Jan;34(1):102-8. - http://cytoscape-publications.tumblr.com/post...

A dictionary of behavioral motifs reveals clusters of genes affecting Caenorhabditis elegans locomotion. Brown et al, Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):791-6. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Transcriptome-wide expansion of non-coding regulatory switches: evidence from co-occurrence of Alu exonization, antisense and editing. Mandal et al, Nucleic Acids Res. 2013 Jan 8. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment. Bertone et al, Database (Oxford). 2013 Jan 9;2013(0):bas057. - http://cytoscape-publications.tumblr.com/post...

CySBGN: A Cytoscape plug-in to integrate SBGN maps Goncalves et al, BMC Bioinformatics 2013, 14:17. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Systems-level analysis of genome-wide association data. Farber et al, G3 - Genes, Genomes, Genetics. 2013 Jan;3(1):119-29. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Transcriptional networks controlling the cell cycle. Bonke et al, G3 - Genes, Genomes, Genetics. 2013 Jan;3(1):75-90. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Reverse engineering and analysis of large genome-scale gene networks. Aluru et al, Nucleic Acids Res. 2013 Jan 1;41(1):e24. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...

Postdoctoral Fellowship in Biological Data Visualization - http://groups.google.com/group...

SLiMScape: a Protein Short Linear Motif Analysis Plugin for Cytoscape - http://groups.google.com/group...

How to Report Cytoscape 3 Beta Bugs - http://groups.google.com/group...