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Cytoscape

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Comparative genomics boosts target prediction for bacterial small RNAs. Wright PR, Richter AS, Papenfort K, Mann M, Vogel J, Hess WR, Backofen R, Georg J (2013) Proc. Natl. Acad. Sci. U.S.A. 37(110). Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Comparative genomics boosts target prediction for bacterial small RNAs.
Wright PR, Richter AS, Papenfort K, Mann M, Vogel J, Hess WR, Backofen R, Georg J (2013) Proc. Natl. Acad. Sci. U.S.A. 37(110).
Cytoscape cited!
ER exit sites are physical and functional core autophagosome biogenesis components. Graef M, Friedman JR, Graham C, Babu M, Nunnari J (2013) Mol. Biol. Cell 18(24). - http://cytoscape-publications.tumblr.com/post...
ER exit sites are physical and functional core autophagosome biogenesis components.
Graef M, Friedman JR, Graham C, Babu M, Nunnari J (2013) Mol. Biol. Cell 18(24).
Improving Social Connection Through a Communities of Practice–Inspired Cognitive Work Analysis Approach Adam Euerby and Catherine M. Burns, Human Factors: The Journal of the Human Factors and Ergonomics Society,12 September 2013. - http://cytoscape-publications.tumblr.com/post...
Improving Social Connection Through a Communities of Practice–Inspired Cognitive Work Analysis Approach
 
Adam Euerby and Catherine M. Burns, Human Factors: The Journal of the Human Factors and Ergonomics Society,12 September 2013.
Rac1 is deactivated at integrin activation sites through an IQGAP1-filamin-A-RacGAP1 pathway. Jacquemet G, Morgan MR, Byron A, Humphries JD, Choi CK, Chen CS, Caswell PT, Humphries MJ (2013) J. Cell. Sci. Pt 18(126). Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Rac1 is deactivated at integrin activation sites through an IQGAP1-filamin-A-RacGAP1 pathway.
Jacquemet G, Morgan MR, Byron A, Humphries JD, Choi CK, Chen CS, Caswell PT, Humphries MJ (2013) J. Cell. Sci. Pt 18(126).
 
Cytoscape cited!
Safeguards for Cell Cooperation in Mouse Embryogenesis Shown by Genome-Wide Cheater Screen. Dejosez M, Ura H, Brandt VL, Zwaka TP (2013) Science (). - http://cytoscape-publications.tumblr.com/post...
Safeguards for Cell Cooperation in Mouse Embryogenesis Shown by Genome-Wide Cheater Screen.
Dejosez M, Ura H, Brandt VL, Zwaka TP (2013) Science ().
Mitochondrial genome rearrangements in Glomus species triggered by homologous recombination between distinct mtDNA haplotypes. Beaudet D, Terrat Y, Halary S, de la Providencia IE, Hijri M (2013) Genome Biol Evol (). - http://cytoscape-publications.tumblr.com/post...
Mitochondrial genome rearrangements in Glomus species triggered by homologous recombination between distinct mtDNA haplotypes.
Beaudet D, Terrat Y, Halary S, de la Providencia IE, Hijri M (2013) Genome Biol Evol ().
Network Analysis Identifies an HSP90-Central Hub Susceptible in Ovarian Cancer. Liu H, Xiao F, Serebriiskii IG, O’Brien SW, Maglaty MA, Astsaturov I, Litwin S, Martin LP, Proia DA, Golemis EA, Connolly DC (2013) Clin. Cancer Res. (). Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Network Analysis Identifies an HSP90-Central Hub Susceptible in Ovarian Cancer.
Liu H, Xiao F, Serebriiskii IG, O’Brien SW, Maglaty MA, Astsaturov I, Litwin S, Martin LP, Proia DA, Golemis EA, Connolly DC (2013) Clin. Cancer Res. ().
 
Cytoscape cited!
RCytoscape: tools for exploratory network analysis. Shannon PT, Grimes M, Kutlu B, Bot JJ, Galas DJ (2013) BMC Bioinformatics 1(14). Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
RCytoscape: tools for exploratory network analysis.
Shannon PT, Grimes M, Kutlu B, Bot JJ, Galas DJ (2013) BMC Bioinformatics 1(14).
 
Cytoscape cited!
Intrinsic Disorder in PTEN and its Interactome Confers Structural Plasticity and Functional Versatility. Malaney P, Pathak RR, Xue B, Uversky VN, Davé V (2013) Sci Rep (3). - http://cytoscape-publications.tumblr.com/post...
Intrinsic Disorder in PTEN and its Interactome Confers Structural Plasticity and Functional Versatility.
Malaney P, Pathak RR, Xue B, Uversky VN, Davé V (2013) Sci Rep (3).
Fungal genes in context: genome architecture reflects regulatory complexity and function. Noble LM, Andrianopoulos A (2013) Genome Biol Evol 7(5). Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Fungal genes in context: genome architecture reflects regulatory complexity and function.
Noble LM, Andrianopoulos A (2013) Genome Biol Evol 7(5).
Cytoscape cited!
Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots. Vidal EA, Moyano TC, Riveras E, Contreras-López O, Gutiérrez RA (2013) Proc. Natl. Acad. Sci. U.S.A. 31(110). Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots.
Vidal EA, Moyano TC, Riveras E, Contreras-López O, Gutiérrez RA (2013) Proc. Natl. Acad. Sci. U.S.A. 31(110).
Cytoscape cited!
Tracking individuals shows spatial fidelity is a key regulator of ant social organization. Mersch DP, Crespi A, Keller L (2013) Science 6136(340). Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Tracking individuals shows spatial fidelity is a key regulator of ant social organization.
Mersch DP, Crespi A, Keller L (2013) Science 6136(340).
 
Cytoscape cited!
Possible Links Between Stress Defense and the Tricarboxylic Acid (TCA) Cycle in Francisella Pathogenesis. Dieppedale J, Gesbert G, Ramond E, Chhuon C, Dubail I, Dupuis M, Guerrera IC, Charbit A (2013) Mol. Cell Proteomics 8(12). - http://cytoscape-publications.tumblr.com/post...
Possible Links Between Stress Defense and the Tricarboxylic Acid (TCA) Cycle in Francisella Pathogenesis.
Dieppedale J, Gesbert G, Ramond E, Chhuon C, Dubail I, Dupuis M, Guerrera IC, Charbit A (2013) Mol. Cell Proteomics 8(12).
Colitis-accelerated colorectal cancer and metabolic dysregulation in a mouse model. Gao Y, Li X, Yang M, Zhao Q, Liu X, Wang G, Lu X, Wu Q, Wu J, Yang Y, Yang Y, Zhang Y (2013) Carcinogenesis 8(34). - http://cytoscape-publications.tumblr.com/post...
Colitis-accelerated colorectal cancer and metabolic dysregulation in a mouse model.
Gao Y, Li X, Yang M, Zhao Q, Liu X, Wang G, Lu X, Wu Q, Wu J, Yang Y, Yang Y, Zhang Y (2013) Carcinogenesis 8(34).
Context-dependent hierarchies in pigeons. Nagy M, Vásárhelyi G, Pettit B, Roberts-Mariani I, Vicsek T, Biro D (2013) Proc. Natl. Acad. Sci. U.S.A. 32(110). Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Context-dependent hierarchies in pigeons.
Nagy M, Vásárhelyi G, Pettit B, Roberts-Mariani I, Vicsek T, Biro D (2013) Proc. Natl. Acad. Sci. U.S.A. 32(110).
Cytoscape cited!
Exploring the role of human miRNAs in virus-host interactions using systematic overlap analysis. Li Z, Cui X, Li F, Li P, Ni M, Wang S, Bo X (2013) Bioinformatics (). - http://cytoscape-publications.tumblr.com/post...
Exploring the role of human miRNAs in virus-host interactions using systematic overlap analysis.
Li Z, Cui X, Li F, Li P, Ni M, Wang S, Bo X (2013) Bioinformatics ().
Systems biology of Ewing sarcoma: a network model of EWS-FLI1 effect on proliferation and apoptosis. Stoll G, Surdez D, Tirode F, Laud K, Barillot E, Zinovyev A, Delattre O (2013) Nucleic Acids Res. (). Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Systems biology of Ewing sarcoma: a network model of EWS-FLI1 effect on proliferation and apoptosis.
Stoll G, Surdez D, Tirode F, Laud K, Barillot E, Zinovyev A, Delattre O (2013) Nucleic Acids Res. ().
Cytoscape cited!
SPNConverter: a new link between static and dynamic complex network analysis. Dent JE, Yang X, Nardini C (2013) Bioinformatics (). Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
SPNConverter: a new link between static and dynamic complex network analysis.
Dent JE, Yang X, Nardini C (2013) Bioinformatics ().
Cytoscape cited!
The Chlorite Dismutase (HemQ) from Staphylococcus aureus Has a Redox-sensitive Heme and Is Associated with the Small Colony Variant Phenotype. Mayfield JA, Hammer ND, Kurker RC, Chen TK, Ojha S, Skaar EP, Dubois JL (2013) J. Biol. Chem. 32(288). - http://cytoscape-publications.tumblr.com/post...
The Chlorite Dismutase (HemQ) from Staphylococcus aureus Has a Redox-sensitive Heme and Is Associated with the Small Colony Variant Phenotype.
Mayfield JA, Hammer ND, Kurker RC, Chen TK, Ojha S, Skaar EP, Dubois JL (2013) J. Biol. Chem. 32(288).
T2D@ZJU: a knowledgebase integrating heterogeneous connections associated with type 2 diabetes mellitus. Yang et al, Database (Oxford). 2013 Jul 11;2013(0):bat052. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
T2D@ZJU: a knowledgebase integrating heterogeneous connections associated with type 2 diabetes mellitus.
Yang et al, Database (Oxford). 2013 Jul 11;2013(0):bat052.
 
Cytoscape cited!
Pathogenic rare copy number variants in community-based schizophrenia suggest a potential role for clinical microarrays. Costain et al, Hum Mol Genet. 2013 Jun 27. - http://cytoscape-publications.tumblr.com/post...
Pathogenic rare copy number variants in community-based schizophrenia suggest a potential role for clinical microarrays.
Costain et al, Hum Mol Genet. 2013 Jun 27.
NOA: a cytoscape plugin for network ontology analysis. Zhang et al, Bioinformatics. 2013 Jul 3. - http://cytoscape-publications.tumblr.com/post...
NOA: a cytoscape plugin for network ontology analysis.
Zhang et al, Bioinformatics. 2013 Jul 3.
Inferring the functional effect of gene expression changes in signaling pathways. Sebastián-León et al, Nucleic Acids Res. 2013 Jun 8. - http://cytoscape-publications.tumblr.com/post...
Inferring the functional effect of gene expression changes in signaling pathways.
Sebastián-León et al, Nucleic Acids Res. 2013 Jun 8.
Genome-wide methylated DNA immunoprecipitation analysis of patients with polycystic ovary syndrome. Shen et al, PLoS One. 2013 May 21;8(5):e64801. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Genome-wide methylated DNA immunoprecipitation analysis of patients with polycystic ovary syndrome.
Shen et al, PLoS One. 2013 May 21;8(5):e64801.
 
Cytoscape cited!
Transcriptional dissection of human limbal niche compartments by massive parallel sequencing. Bath et al, PLoS One. 2013 May 22;8(5):e64244. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Transcriptional dissection of human limbal niche compartments by massive parallel sequencing.
Bath et al, PLoS One. 2013 May 22;8(5):e64244.
 
Cytoscape cited!
Cytoscape app store. Lotia et al, Bioinformatics. May 2013. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Cytoscape app store.
Lotia et al, Bioinformatics. May 2013.
 
Cytoscape cited!
Genome-scale modeling of the protein secretory machinery in yeast. Feizi  et al, PLoS One. May 2013. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Genome-scale modeling of the protein secretory machinery in yeast.
Feizi  et al, PLoS One. May 2013.
 
Cytoscape cited!
Cytoscape programming job opening at UCSD - http://groups.google.com/group...
Structure and non-structure of centrosomal proteins. Dos Santos et al, PLoS One. May 2013. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Structure and non-structure of centrosomal proteins.
Dos Santos et al, PLoS One. May 2013.
 
Cytoscape cited!
Worldwide spread of dengue virus type 1. Villabona-Arenas et al, PLoS One. 2013 May 13. Cytoscape cited! - http://cytoscape-publications.tumblr.com/post...
Worldwide spread of dengue virus type 1.
Villabona-Arenas et al, PLoS One. 2013 May 13.
 
Cytoscape cited!
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