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David G. Pisano › Comments
TT18: Arif Anwar - Analysis of next-generation genome and transcriptome re-sequencing data using integrated bioinformatics approaches and pipelines
Synamatix; http://www.synamatix.com/
- Diego M. Riaño-Pachón
Established in 2001 by Robert Hercus
- Diego M. Riaño-Pachón
current challenges, managing data: storing and moving around
- Diego M. Riaño-Pachón
several steps in the analysis pipeline
- Diego M. Riaño-Pachón
open source software integrated into synamatix pipeline:one-stop bioinformatics service
- Diego M. Riaño-Pachón
de-novo genome and transcriptome assembly: no use of related genomes in the assembly process!
- Diego M. Riaño-Pachón
genome assembly:
- Diego M. Riaño-Pachón
Basic pipeline: remove contaminant; remove read artifacts, false PEs, homopolymers; trim poor quality reads
- Diego M. Riaño-Pachón
use rule matrix to filter and rank SNPs, indels, and structural variations
- Diego M. Riaño-Pachón
optimized algorithms for SNP detection even at low coverage
- Diego M. Riaño-Pachón
The use Circos (http://mkweb.bcgsc.ca/circos/) plots for visualization of CNAs and CNVs
- David G. Pisano
very fast comparative genomics of bacterial and eukaryotic genomes
- Diego M. Riaño-Pachón
SIG: DAM: Data and Analysis Management: Adapting the Galaxy Bioinformatics Tool to Support Semantic Web Service Composition, Eileen Kramer, University of Georgia
Cass Johnston and Mike Chelen liked this
mentioned both WSDL-S and SAWSDL for the semantic web service functionality they're implementing
- Allyson Lister
That could make Galaxy attractive to a lot more people as embedding additional tools so far always required a local Galaxy installation
- Oliver Hofmann
Workflow composition canvas resembles Yahoo pipes for web mashups - http://pipes.yahoo.com
- David G. Pisano
I like program schemas where you can't read any class description :)
- Oliver Hofmann
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