"October 3, 2007 lecture by Bill Thies for the Stanford University Computer Systems Colloquium (EE 380). Bill Thies provides an overview of microfluidic technologies from a computer science perspective, highlight areas in the which computer science researchers can contribute to this field; he will also describe recent work in developing new... - http://www.youtube.com/watch...
Chris Seidel's 2008 "Biohacking - An Overview" (part 1 of 6). ""Biological systems are large assemblies of parts that function together following rules of basic chemistry. As systems, they can be studied, modified, and engineered for novel purposes. DNA molecules contain the information used to encode living systems, and methods exist for... - http://www.youtube.com/watch...
I have a DIY PCR lab for sale, including hood, PCR machine including manual, centrifuge, mini centrifuge, vortex, gelbox. All in great condition and verified working. Please get in touch with questions.
Hi Kevin - I have to do a HS science project & am thinking about doing it on DNA. Don't have much $$'s. If you still have things to sell can you send me info & price?
- Tyoung
Hi do you still have your equipment? I'm interested in purchasing what you have. What are you asking for them?
- Melody Latronico
"The first time Jay Keasling remembers hearing the word “artemisinin,” about a decade ago, he had no idea what it meant. “Not a clue,” Keasling, a professor of biochemical engineering at the University of California at Berkeley, recalled. Although artemisinin has become the world’s most important malaria medicine, Keasling wasn’t an expert on infectious diseases. But he happened to be in the process of creating a new discipline, synthetic biology, which—by combining elements of engineering, chemistry, computer science, and molecular biology—seeks to assemble the biological tools necessary to redesign the living world."
- Mackenzie Cowell
from Bookmarklet
Here we demonstrate the use of a new genetically encoded light-control system based on an optimized, reversible protein–protein interaction from the phytochrome signalling network of Arabidopsis thaliana. Because protein–protein interactions are one of the most general currencies of cellular information, this system can, in principle, be generically used to control diverse functions. Here we show that this system can be used to translocate target proteins precisely and reversibly to the membrane with micrometre spatial resolution and at the second timescale. We show that light-gated translocation of the upstream activators of Rho-family GTPases, which control the actin cytoskeleton, can be used to precisely reshape and direct the cell morphology of mammalian cells. The light-gated protein–protein interaction that has been optimized here should be useful for the design of diverse light-programmable reagents, potentially enabling a new generation of perturbative, quantitative experiments in cell biology.
- Mackenzie Cowell
from Bookmarklet
Badass. Light as a general-purpose input for protein logic in mammalian cells.
- Mackenzie Cowell
VASTAL is a temporary research and education institute that Zaretsky has created in Amsterdam following an invitation by the Waag Society...
http://www.we-make-money-not-art.com/archive...
"In all likelihood, the right way to regulate biohacking will not become apparent for some time. But some people think that any regulation at all could be harmful. Dr Carlson, who has a book on biohacking coming out later this year, is a proponent of light regulation at most. “If you look at our ability to respond to infectious diseases at this point in time, we’re essentially helpless,” he says. “The quandary we face is that we need the garage hackers, because that’s where innovation comes from.” Freeman Dyson, a venerable and polymathic physicist who has been thinking about the problem, is also a believer in biological innovation. He has written about a variety of futuristic possibilities, including modified trees that are better than natural ones at absorbing carbon dioxide, and termites that can eat old cars. If regulation of biohacking is too tight, such innovations—or, at least, things like them—might never come to pass."
- Jason Bobe
from Bookmarklet
"ViXra.org is an e-print archive set up as an alternative to the popular arXiv.org service owned by Cornell University. It has been founded by scientists who find they are unable to submit their articles to arXiv.org because of Cornell University's policy of endorsements and moderation designed to filter out e-prints that they consider inappropriate. ViXra is an open repository for new scientific articles. It does not endorse e-prints accepted on its website, neither does it review them against criteria such as correctness or author's credentials."
- Jason Bobe
from Bookmarklet
"We have built a mobile phone-mounted light microscope and demonstrated its potential for clinical use by imaging P. falciparum-infected and sickle red blood cells in brightfield and M. tuberculosis-infected sputum samples in fluorescence with LED excitation."
- Mike Chelen
Mike, thanks for also posting a comment on the Manuscript as well ;-)
- Graham Steel
Graham, had fun testing out the web-based comment system, and comparing it with citation manager notes
- Mike Chelen
My guess would be on the order of $25-50,000 per year. The UC OSC maintains a curated list of price info for about 3000 of the "top scholarly journals" (http://osc.universityofcalifornia.edu/journal...). The average list price is about $1250/title (http://www.sennoma.net/main...), but I would expect the "top 20" to be more expensive than average.
- Bill Hooker
Two potential problems: first, 20 journals doesn't get you very far -- there are more than 20,000 to choose from; and second, how do you determine the "top 20"? We have had many, many conversations around here on this topic...
- Bill Hooker
I was niavely thinking we could pick based on eigenfactor ranking. Maybe we could afford many more than 20 - it all depends on how much the licenses could be negotiated for and the tension between number of subscribers and subscription cost. How much do alumni organization (that include access to the Uni library) subscriptions typically cost?
- Mackenzie Cowell
from iPhone
Why do scientists keep playing hostage to the copyright bandits that pistol-whipped their publicly-funded intellectual property from them to begin with? Let's consider the grey option, not too seriously, just as a fun literary idea: One could use existing hashes (pubmed ID, DOI, etc.) and paper databases (pubmed) to build a "swedish-hosted" bittorrent database of every article ever...
more...
- Anselm Levskaya
Anselm, good idea. We should focus from the beginning on empowering researchers from the BRIC. A successful international sci-pirate bay will be helpful in demonstrating the size and desire of this otherwise hidden market. Like how napster and bittorent forced the music industry to develop iTunes and Amazon MP3.
- Mackenzie Cowell
from iPhone
Anselm -- by "patchwork of charitable proxies" I assume you mean HINARI/OARE/AGORA, recently rebranded "research4life (http://www.research4life.org). They provide access to almost 9,000 journals to researchers in qualifying countries (http://www.research4life.org/Pages...). If someone were to try to put Mackenzie's idea into practice, that is a reasonable benchmark.
- Bill Hooker
Bill -- HINARI/OARE/AGORA is charming, but the fact is that they provide access to third world scientists in countries so third world they don't have any science to speak of. Most of my experience with developing science is in Chile, a country that does -not- qualify for these free access points and in truth has very little general access to journals that is not provided by individuals...
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- Anselm Levskaya
I don't really disagree, Anselm; I was just using R4L as a benchmark for Mackenzie's idea. (Although I would add that even if a country doesn't have much research infrastructure it surely has some kind of health service, or at least some struggling doctors and nurses, for whom access to the primary health literature could mean a great deal.)
- Bill Hooker
The bittorent idea is interesting, though blatantly illegal -- I could see a role for civil disobedience... Just some thinking out loud: you'd need more greyhats -- there are 19 million documents in PubMed alone. You would also need to withstand the full legal and technological might of a $5 billion/year industry, since what you propose would, if successful, destroy traditional...
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- Bill Hooker
I like the pirate bay idea. A lot of people have a lot of PDFs stored for themselves already. I've been thinking along these lines for quite some time now, essentially since I started entering metadata into my Mendeley library. Now if one could get the PTP technology from PB and write an interface such that one could post your Mendeley library with metadata to the PTP network, one would have quite a sizable db to start with...
- Björn Brembs
Bill does have a good point about shooting ourselves in the foot with back-catalog digitization efforts. Unless your army of disobediant first-world grad students is ready to spend some time with a scanner, this isn't a no-harm process.
- Mr. Gunn
Can't we just rely on google for the back cataloging? I like the PDFbay Idea, although it's blatantly illegal, and I have no problem accessing every journal I could possibly want to read from my current university. There's also that pesky issue of PDF watermarking...
- Brian Krueger - LabSpaces
Google can't index a book existing only in paper form. They do have a digitization program, but I don't know how much support is has.
- Mr. Gunn
getarticles@googlegroups.com, run by http://contentliberation.com/, already demonstrates that at some scale, on-demand liberation of protected content works. We should think about how to build PDFbay on a foundation of on-demand liberation requests mediated by groups like getarticles. (I hear there is a similar friendfeed room?)
- Mackenzie Cowell
Content Liberation seem to want to describe what they do as civil disobedience, but it isn't. Quite apart from the issues of unintended harm that MrG and I have pointed out, I am not down with simple lawbreaking. If you break a law because you think it's unjust, you should be willing to accept the unjust consequences, using the whole process as a means to challenge and change the law....
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- Bill Hooker
The Refs Wanted room (http://friendfeed.com/referen...) operates deliberately and openly in the grey area between Fair Use and PR Nightmare for publishers who might want to prevent such activities. It's not clear that the room's activity is illegal, largely because it would be very difficult to demonstrate that it causes measurable harm to subscriptions. This grey status depends...
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- Bill Hooker
I gather that 2nd/3rd world distribution of article sets is already happening through the distribution of hard drives filled with indexed articles. 1.9E6*~5MB = 9.5TB. So it's not that big for modern storage media. A single drive would soon be able to hold it. I'd never recommend anyone in america or europe to post themselves up for legal annihilation by playing at revolutionary. But...
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- Anselm Levskaya
"Is your vegan food really vegan? We pull out all the stops to test 17 LA area vegan restaurants for non-vegan ingredients, and to find out why seven of them failed miserably."
- Mike Chelen
"This tree is from an analysis of small subunit rRNA sequences sampled from about 3,000 species from throughout the Tree of Life. The species were chosen based on their availability, but we attempted to include most of the major groups, sampled very roughly in proportion to the number of known species in each group (although many groups remain over- or under-represented). The number of species represented is approximately the square-root of the number of species thought to exist on Earth (i.e., three thousand out of an estimated nine million species), or about 0.18% of the 1.7 million species that have been formally described and named."
- Mackenzie Cowell
from Bookmarklet
Just a bit biased towards multicellular eukaryotes. The Hillis lab should put up a tree where they choose the organisms based on rRNA sequence diversity.
- John Eargle
""X, Y, Z and U" will open June 4 at the Outpost for Contemporary Art in L.A.'s Highland Park neighborhood. Featured artists include Kim Abeles, Kelly Jaclynn Andres, Jason Bobe, Mackenzie Cowell, Liz Kueneke, Andrea Polli and Chuck Varga. The show is designed to address a series of philosophical questions: Where is science and how do we interact with it? Who maps information, and who has access? Can anyone participate in genomic research?"
- Jason Bobe
from Bookmarklet
Trying to organize a DIYbio meeting in Boulder CO on Fri Jul 24th, 7-9 pm @ the Boulder Bookstore on Pearl St. Please let me know if there are any diybio'ers in the area - m@melanieswan.com or @lablogga
"This agreement puts into action the words of Chad Holliday, DuPont Chairman and CEO, and Environmental Defense President Fred Krupp in the June 14, 2005 edition of the Wall Street Journal: "An early and open examination of the potential risks of a new product or technology is not just good common sense – it's good business strategy." The two organizations now have released a draft framework to establish a process for ensuring the responsible development of nanoscale materials, which can then be widely used by companies and other organizations."
- Jason Bobe
from Bookmarklet
QPCR is a sensitive method for cDNA and genomic DNA measurement. The UPL system can be used for virtually any DNA for a QPCR with high sensitivity.
This is how I design QPCR oligos:
http://labtutorials.org/2009...