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GigaScience

GigaScience

Open-access, open-data journal/database from the BGI and BioMed Central
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Community Genomes: From the Peoples Parrot, to “Crowdfernding”. - http://blogs.biomedcentral.com/gigablo...
All systems go at ICSB 2014 and the Great GigaScience and Galaxy (G3) workshop - http://blogs.biomedcentral.com/gigablo...
Workshops now at #g3workshop. Claire Slogget leading the #usegalaxy workshop, & @methylnick showing us @authorea https://www.authorea.com/
Final GigaSlides from @bobbledavidson at the #g3workshop: Open Source - Tools for Reproducibility http://www.slideshare.net/GigaSci... #usegalaxy
These are the slide from @SCEdmunds talk at the #g3workshop: #opendata & the reproducibility crisis http://www.slideshare.net/GigaSci... #opendata
Slides from @Medi_Cole talk at the #g3workshop: #OpenAccess Publishing - What you need to know http://www.slideshare.net/GigaSci...
Rob Davidson at the G3 Workshop: Open Source - Tools for Reproducibility - http://www.slideshare.net/GigaSci...
Rob Davidson at the G3 Workshop: Open Source - Tools for Reproducibility
Nicole Nogoy at the G3 Workshop: Open Access Publishing - What you need to Know - http://www.slideshare.net/GigaSci...
Nicole Nogoy at the G3 Workshop: Open Access Publishing - What you need to Know
@mdshw5 FYI we have the 4th (R7.3) dataset up now, but are still struggling to fix CloudFront https://t.co/9E2SGo5iqe
Clive Morris says to watch out from a position statement coming soon from NHMRC on #opendata #g3workshop
Interesting to hear from Clive Morris there were ideas to set up a PMC Australia #g3workshop #openaccess
CM: NHMRC following lead set by NIH. Strategic plan promoting #openaccess, since 2012 need to deposit "somewhere" within 1 year #g3workshop
CM: NHMRC does a broad range of things, from dishing out $800M of research budget budget to advising the PM on medical marijuana #g3workshop
Good to get an Australian funder #openaccess perspective now from Clive Morris from NHMRC on their policies & guidelines #g3workshop
Thanks Maria! Also need to update slides that now >60 #usegalaxy servers. Showing examples of @usegalaxyp & Cistrome #g3workshop
RT @hdashnow: @bobbledavidson: Welcome to our lab. Know any programming? No? Okay, you need to learn R, Python, Matlab. Or just use Galaxy. #g3workshop
Need to update our slides as Maria says #usegalaxy now has >50K registered users #g3workshop
Maria Doyle: #usegalaxy originally a genomics workbench, but now being used cross discipline. E.g. from audience of linguistics! #g3galaxy
Following on nicely from GigaGalaxy, next at #g3workshop is Maria Doyle from Peter Mac giving an overview & some examples of #usegalaxy
Rob now onto VMs, plugging example we are just about to publish (..watch this space) #g3workshop
RT @hdashnow: @bobbledavidson: Knitr and IPythonNotebook. Explaining your work to your future self #g3workshop
Rob now onto Knitr & dynamic documents, giving e.g. of reproducible electrophysiology paper we published http://blogs.biomedcentral.com/gigablo... #g3workshop
Scott Edmunds talk at G3 (Great GigaScience & Galaxy) workshop: Open Data: the reproducibility crisis, and the need for transparency. - http://www.slideshare.net/GigaSci...
Scott Edmunds talk at G3 (Great GigaScience & Galaxy) workshop: Open Data: the reproducibility crisis, and the need for transparency.
RD will save the #usegalaxy overview for next speaker, but bigging up our GigaGalaxy server http://galaxy.cbiit.cuhk.edu.hk/ #g3galaxy
HT from Rob of @JCellBiol of the great work they've done with @openmicroscopy on their dataviewer http://jcb-dataviewer.rupress.org/ #g3workshop
Rob now onto the problems with imaging data & benefits of @openmicroscopy Check out OME http://www.openmicroscopy.org/site #g3workshop
.@bobbledavidson giving our GigaDB code in GitHub some love & attention https://t.co/cr5erX4eg9 #g3workshop
.@bobbledavidson showing the scale of reproducibility problem with Arizona study http://reproducibility.cs.arizona.edu/ #g3workshop https://twitter.com/GigaSci...
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