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Semantic Web for Health Care and Life Sciences IG
FF Room around http://esw.w3.org/topic/HCLSIG:
Semantic Web for Health Care and Life Sciences Interest Group
Does anybody have suggestions for text mining tool / API web based / library that would allow me to use my curated keywords (phenotypes) to fetch associated genes from the Pubmed abstract and free articles. These keywords are from specific tissue so would want tissue specific hits only. Please advise me on available options.
Yasunori YAMAMOTO liked this
Plus91 to Doctors, Students, & Health Care Professionals, HARVARD MEDICAL, Semantic Web for Health Care and Life Sciences IG
Top 5 Free Medical Reference Apps For Android Smartphones - http://technology4doctors.blogspot.com/2011... (via http://ff.im/IJxWp)
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Plus91 to Plus91's feed, Doctors, Students, & Health Care Professionals, HARVARD MEDICAL, Semantic Web for Health Care and Life Sciences IG
Fwd: U.S. and Global Survey of Health Care Consumers 2011: Key Findings - http://digital-medicine.posterous.com/us-and-... (via http://ff.im/GgTtu)
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Fwd: Thematic Series around #RDF in chemistry now online - http://chem-bla-ics.blogspot.com/2011... (via http://friendfeed.com/egonw...)
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The LODD task force contribution can be found at http://www.jcheminf.com/content...
- Egon Willighagen
Fwd: the isItOpen(Data) stats for the #lodd data: 2 use a closed ontology, 3 don't specify a license, 1 is unclear (seems closed), 5 with NC (via http://friendfeed.com/egonw...)
Fwd: the #swat4ls2009 supplement has gone live -> http://www.jbiomedsem.com/supplem... #rdf #semanticweb #obo #umls #textmining #emboss #proteochemometrics (via http://friendfeed.com/egonw...)
RDF graph visualization with domain knowledge... it recognizes predicates (SMILES in this case) and can visualize the chemical structure, instead of just the fields... (of course, in a pluggable Bioclipse way) It currently support sequences and chemical structures.
Jesper Lind, Takanori Ohgaru, Yaroslav Nikolaev and 6 other people liked this
HIPAA compliant mobile consultations for Doctors http://blog.digmed.in/archive...
Egon Willighagen to Egon's feed, Semantic Web for Health Care and Life Sciences IG, Science 3.1415, Science Semantics
Fwd: XHTML+RDFa: chemical examples - http://chem-bla-ics.blogspot.com/2010... (via http://friendfeed.com/egonw...)
Egon Willighagen to Semantic Web for Health Care and Life Sciences IG, Semantic Web, Science Semantics
Fwd: Setting up a local Semantic Wiki with RDFIO and SPARQL support - http://chem-bla-ics.blogspot.com/2010... (via http://friendfeed.com/egonw...)
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Matteo Brunati and Mike Chelen liked this
Fwd: Schemapedia - http://schemapedia.com/ (via http://friendfeed.com/egonw...)
Fwd: diving into the #acs symposium meeting organization #howto for the #rdf meeting in autumn in #boston for #cinf #cheminformatics (via http://friendfeed.com/egonw...)
Mike Chelen liked this
CSHALS coverage on twitter: http://search.twitter.com/search...
Egon Willighagen to Egon's feed, Open Chemical Data, Open Notebook Science Solubility Project, The Life Scientists, Blue Obelisk, Semantic Web for Health Care and Life Sciences IG
Panton Principles. Endorse Open Data, go visit: http://pantonprinciples.org/
Patricia F. Anderson, Piotr Byzia, Brian Westra and 17 other people liked this
Let's see if we can make the 500 endorsements today.
- Egon Willighagen
What would be v cool would be to have a large number for tomorrow. Peter is hoping to sign during his talk tomorrow and that is being widely webcast. Will be writing my blog post on the plane.
- Cameron Neylon
from Android
Yes, that would be great... Good to see the news spread so fast...
- Egon Willighagen
It is kind of a shame that the endorsement list is not made machine-readable... e.g. via RDFa... otherwise, Pierre would have created us a nice Google Map with endorsement origins ;)
- Egon Willighagen
Count votes per country (naive one liner): wget -O endorsed.html http://pantonprinciples.org/endorse...; xpath -q -e "//span[@class='signature']/text()" endorsed.html | cut -d',' -f3 | sort | uniq -c
- Egon Willighagen
@Neil... yes, the button is nice... but where's the poster we can put up at our universities?
- Egon Willighagen
Updated xpath: //span[@class='signature']/span[@class='Country']/text()
- Egon Willighagen
Still far below the hoped for 500 ... :(
- Egon Willighagen
Sad to see that the public signing by the two Peters did not bring any further signature.
- Daniel Mietchen
63 endorsements now... much lower than I had expected :(
- Egon Willighagen
Fwd: ChEMBL RDF #1:SPARQL end point - http://chem-bla-ics.blogspot.com/2010... (via http://friendfeed.com/egonw...)
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Fwd: RDF, Jena, Bioclipse, Eclipse, Zest: Mashups - http://chem-bla-ics.blogspot.com/2010... (via http://friendfeed.com/egonw...)
Egon Willighagen to Semantic Web for Health Care and Life Sciences IG, SWAT4LS2009, The Life Scientists
Fwd: Semantic Chemistry with the Resource Description Framework - http://chem-bla-ics.blogspot.com/2010... (via http://friendfeed.com/egonw...)
Rajarshi Guha liked this
Khader Shameer to Khader's feed, The Life Scientists, Semantic Web for Health Care and Life Sciences IG, Bioinformatics, R for Bioinformatics, Ruby for Bioinformatics
Asia Pacific Bioinformatics Conference (APBC2010) - http://cs.nyu.edu/parida...
Abhishek Tiwari liked this
Conference URLs : http://cs.nyu.edu/parida... | http://www.webdevelopment4ri.com/ncbs... Details about the local transport and venue : http://apbc2010.blogspot.com/
- Khader Shameer
from Bookmarklet
Bio-Ontologies 2009: Knowledge in Biology -- http://bio-ontologies.org.uk/program... (via http://friendfeed.com/ismbecc...)
Mike Chelen liked this
Fwd: semanticscience - Project Hosting on Google Code - http://code.google.com/p... (via http://friendfeed.com/yokofak...)
Mike Chelen liked this
Egon Willighagen to Egon's feed, Semantic Web for Health Care and Life Sciences IG, Science Semantics
Fwd: RDFa in Drupal - examples and use cases - http://www.youtube.com/watch... (via http://friendfeed.com/semanti...)
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Mike Chelen liked this
Creates a #FriendFeed group for the #SWAT4LS conference later this year in Amsterdam: http://friendfeed.com/swat4ls...
Mike Chelen liked this
Duncan, are you going?
- Egon Willighagen
I haven't seen a list of papers... I did see that I was #15 to submit an abstract... and that was close before the deadline... unless there is a second track for papers...
- Egon Willighagen
Pierre Lindenbaum to Pierre's feed, The Life Scientists, Semantic Web for Health Care and Life Sciences IG
http://kml.dbcls.jp/piperma... DBCLS/Japan International Invitation Program Application (metadata / the semantic web )
Mitsuteru N, Toshiaki Katayama and Abhishek Tiwari liked this
Fwd: Birds of a Feather session: Semantic Web-Linked Data, organized by Eric Neumann, in T5 (via http://friendfeed.com/ismbecc...)
Life microblogging Michel Dumontier's presentation at Uppsala University: bookmarks http://delicious.com/egonw...
Mike Chelen liked this
Twitter report at http://twitter.com/#search...
- Egon Willighagen
Announcing SIDER: a database of side effects - http://blog.mckuhn.de/2009...
NMRShiftDB enters rdf.openmolecules.net - http://chem-bla-ics.blogspot.com/2009...
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Mike Chelen liked this
This should be a rather unique node in the LODD network...
- Egon Willighagen
Antony, I just added spectrum-DOI relations, as found in the NMRShiftDB data set.
- Egon Willighagen
CSHALS 2009 - FriendFeed - http://friendfeed.com/rooms...
At least some HCLSig members are at CSHALS...
- Egon Willighagen
Solubility Data in Bioclipse #2: handling RDF - http://chem-bla-ics.blogspot.com/2009...
Pierre Lindenbaum liked this
Shows RDF documents can be downloaded and SPARQL can be done offline, using Bioclipse...
- Egon Willighagen
Anyone around involved in HCLSIG?
Pierre Lindenbaum liked this
Not yet, but perhaps moving in that direction...
- Andrew Su
What Andrew said.
- Richard Klancer
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