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Semantic Web for Health Care and Life Sciences IG

Semantic Web for Health Care and Life Sciences IG

FF Room around http://esw.w3.org/topic/HCLSIG: Semantic Web for Health Care and Life Sciences Interest Group
pradeep
Does anybody have suggestions for text mining tool / API web based / library that would allow me to use my curated keywords (phenotypes) to fetch associated genes from the Pubmed abstract and free articles. These keywords are from specific tissue so would want tissue specific hits only. Please advise me on available options.
Plus91
Plus91
Egon Willighagen
Fwd: Thematic Series around #RDF in chemistry now online - http://chem-bla-ics.blogspot.com/2011... (via http://friendfeed.com/egonw...)
Fwd: Thematic Series around #RDF in chemistry now online - http://chem-bla-ics.blogspot.com/2011/05/thematic-series-around-rdf-in-chemistry.html (via http://ff.im/DHlWv)
The LODD task force contribution can be found at http://www.jcheminf.com/content... - Egon Willighagen
Egon Willighagen
Fwd: the isItOpen(Data) stats for the #lodd data: 2 use a closed ontology, 3 don't specify a license, 1 is unclear (seems closed), 5 with NC (via http://friendfeed.com/egonw...)
Egon Willighagen
Egon Willighagen
RDF graph visualization with domain knowledge... it recognizes predicates (SMILES in this case) and can visualize the chemical structure, instead of just the fields... (of course, in a pluggable Bioclipse way) It currently support sequences and chemical structures.
rdfEditor1.png
Neel
Egon Willighagen
Egon Willighagen
Egon Willighagen
Egon Willighagen
Egon Willighagen
Egon Willighagen
Let's see if we can make the 500 endorsements today. - Egon Willighagen
What would be v cool would be to have a large number for tomorrow. Peter is hoping to sign during his talk tomorrow and that is being widely webcast. Will be writing my blog post on the plane. - Cameron Neylon from Android
Yes, that would be great... Good to see the news spread so fast... - Egon Willighagen
It is kind of a shame that the endorsement list is not made machine-readable... e.g. via RDFa... otherwise, Pierre would have created us a nice Google Map with endorsement origins ;) - Egon Willighagen
Count votes per country (naive one liner): wget -O endorsed.html http://pantonprinciples.org/endorse...; xpath -q -e "//span[@class='signature']/text()" endorsed.html | cut -d',' -f3 | sort | uniq -c - Egon Willighagen
@Neil... yes, the button is nice... but where's the poster we can put up at our universities? - Egon Willighagen
Updated xpath: //span[@class='signature']/span[@class='Country']/text() - Egon Willighagen
Still far below the hoped for 500 ... :( - Egon Willighagen
Sad to see that the public signing by the two Peters did not bring any further signature. - Daniel Mietchen
63 endorsements now... much lower than I had expected :( - Egon Willighagen
Egon Willighagen
Egon Willighagen
Egon Willighagen
Khader Shameer
Egon Willighagen
Egon Willighagen
Fwd: semanticscience - Project Hosting on Google Code - http://code.google.com/p... (via http://friendfeed.com/yokofak...)
Egon Willighagen
Egon Willighagen
Duncan, are you going? - Egon Willighagen
I haven't seen a list of papers... I did see that I was #15 to submit an abstract... and that was close before the deadline... unless there is a second track for papers... - Egon Willighagen
Pierre Lindenbaum
Egon Willighagen
Fwd: Birds of a Feather session: Semantic Web-Linked Data, organized by Eric Neumann, in T5 (via http://friendfeed.com/ismbecc...)
Egon Willighagen
Life microblogging Michel Dumontier's presentation at Uppsala University: bookmarks http://delicious.com/egonw...
Egon Willighagen
Announcing SIDER: a database of side effects - http://blog.mckuhn.de/2009...
Egon Willighagen
NMRShiftDB enters rdf.openmolecules.net - http://chem-bla-ics.blogspot.com/2009...
NMRShiftDB enters rdf.openmolecules.net
This should be a rather unique node in the LODD network... - Egon Willighagen
Antony, I just added spectrum-DOI relations, as found in the NMRShiftDB data set. - Egon Willighagen
Egon Willighagen
At least some HCLSig members are at CSHALS... - Egon Willighagen
Egon Willighagen
Solubility Data in Bioclipse #2: handling RDF - http://chem-bla-ics.blogspot.com/2009...
Shows RDF documents can be downloaded and SPARQL can be done offline, using Bioclipse... - Egon Willighagen
Egon Willighagen
Anyone around involved in HCLSIG?
Not yet, but perhaps moving in that direction... - Andrew Su
What Andrew said. - Richard Klancer
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