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added some comments/critique to PHYLIP_tree definition
xrate-validate-grammar, xrate-validate-stockholm-grammar
Thrust (video game) - http://en.wikipedia.org/wiki...
XPilot - http://en.wikipedia.org/wiki...
newick-tree and stockholm-alignment primitives, to convert smobs into Scheme data structures
newick-tree and stockholm-alignment primitives, to convert smobs into Scheme data structures
newick-tree and stockholm-alignment primitives, to convert smobs into Scheme data structures
newick-tree and stockholm-alignment primitives, to convert smobs into Scheme data structures
Added stockholm-row-list primitive to mirror newick-branch-list and enable access to all Stockholm data from Scheme
implementation plan for Stockholm guile primitive stockholm-row-list
implementation plan for Stockholm scheme representation
minor edit to planned Stockholm scheme grammar
Comparative anatomy of the appendix ... http://www.sciencemag.org/cgi...
allowing probabilistic annotation in xrate - http://biskup.biowiki.org/...
grieving Warren DeLano ... http://en.wikipedia.org/wiki... ... http://bytesizebio.net/index...
Guile Scheme bindings for xrate (renamed guile-init.h -> guile-defs.h)
Refactored placeholder & helper methods for guile xrate embedding
Added placeholder method defs in ECFG_main for guile embedding
Renamed placeholder methods for guile embedding
Re-organized ECFG_main::run() into subroutines
somewhat inefficient, but correct, conversion between Guile and DART S-expression types
OMG gitX - git GUI for OSX - so suave http://gitx.frim.nl/index.html one day i will understand all its features.
reorganized src/guile directory
began guile interface to Stockholm class
Added guile smobs example code
How many organisms in a minimal human-supporting ecosystem? http://www.antipope.org/charlie...
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