Oliver Hofmann
ISMB/ECCB Stockholm 2009: Bioinformatics Core Facilities Workshop, Fran Lewitter
Project priorities: just long term misses new customers, grant opportunities. Focus on money or project size misses pilot projects, does not allow diversification. Suggestion: based on merit, what allows the core to grow in new directions, expand, supports the institutional community in general - Oliver Hofmann
Hiring: 50% FTE available for a new person, enough to get someone started. Identify new technologies, hire to get an early start. Consultants can fill gaps. - Oliver Hofmann
Time: maintain an overview of timeframes (putative project starts). Wrap up projects to avoid task switching overhead as much as possible. Make time for the planning stages. - Oliver Hofmann
Expectations: be open and transparent with regards to availability, feasibility, stick to realistic time estimates and turn down work if the resources are not available. Collaborate between Cores - Oliver Hofmann
Cancer UK, Cambridge Core. Prioritize short tasks, genomic tasks. Use queuing system, use steering committee to guide on participation in long term researcher-based projects - Oliver Hofmann
usually 6-10 projects per person at any given time (ouch...) - Oliver Hofmann
Manage workload: define scope early, manage using collaboration software, deliver data in stages - Oliver Hofmann
automate and standardize - Oliver Hofmann
Training / empowering researchers the most important aspect - Oliver Hofmann
Report regularly to all groups / departments, communicate - Oliver Hofmann
Request co-authorship (but do not seem to require it) - Oliver Hofmann
Start of discussion - Oliver Hofmann
Current developments and changes: focus on next-gen - Oliver Hofmann
Benefits of training - Oliver Hofmann
Chargeback model. half of participants fully supported by their institutes - Oliver Hofmann
Hourly charges between 70 and 120$ - Oliver Hofmann
Authorship: mostly just acknowledgement, many cores with focus on master's level students - Oliver Hofmann
Collaboration: central place to share knowledge of methods, tools, evaluation. One place to deposit this information could be the http://www.bioinfo-core.org/index... - Oliver Hofmann
Try to find ways to pool information and resources (similar to the BOSC OpenBio projects) - Oliver Hofmann
Switch of topics on how to handle next-gen seq influx - Oliver Hofmann
What kind of questions are being asked, can they handle the data themselves, and is there any way to build re-useable workflows? Experience seems to be that so far no question (beyond the assembly step) has come up twice. - Oliver Hofmann
Develop method agnostic tools that help the biologist to get a handle on their own data, Eg http://www.bioinformatics.bbsrc.ac.uk/project... - Oliver Hofmann