ISMB/ECCB
TT18: Arif Anwar - Analysis of next-generation genome and transcriptome re-sequencing data using integrated bioinformatics approaches and pipelines
Established in 2001 by Robert Hercus - Diego M. Riaño-Pachón
current challenges, managing data: storing and moving around - Diego M. Riaño-Pachón
several steps in the analysis pipeline - Diego M. Riaño-Pachón
open source software integrated into synamatix pipeline:one-stop bioinformatics service - Diego M. Riaño-Pachón
de-novo genome and transcriptome assembly: no use of related genomes in the assembly process! - Diego M. Riaño-Pachón
genome assembly: - Diego M. Riaño-Pachón
Basic pipeline: remove contaminant; remove read artifacts, false PEs, homopolymers; trim poor quality reads - Diego M. Riaño-Pachón
use rule matrix to filter and rank SNPs, indels, and structural variations - Diego M. Riaño-Pachón
optimized algorithms for SNP detection even at low coverage - Diego M. Riaño-Pachón
The use Circos (http://mkweb.bcgsc.ca/circos/) plots for visualization of CNAs and CNVs - David G. Pisano
very fast comparative genomics of bacterial and eukaryotic genomes - Diego M. Riaño-Pachón