Sign in
or
Join FriendFeed
FriendFeed
is the easiest way to share online.
Learn more »
Join FriendFeed
ISMB/ECCB Stockholm 2009
:
Phil Lord
SIG: BioOntologies. Annotations of SBML Models through Rule-Based Semantic Integration. Allyson Lister, Newcastle University
June 28
-
Comment
-
Like
-
Share
Duncan Hull
liked this
Working on telomere systems biology models -
Phil Lord
SBML allows linking to the underlying biology, but this is hard -
Phil Lord
@Phil Who is presenting this? -
Duncan Hull
Opps -- it's Ally. That's why she hasn't put the discussion up:-) -
Phil Lord
Tempted to comment since we have a 20 minute window where Allyson cannot reply... -
Oliver Hofmann
erm, yes, bit embarrasing -- not sure how they missed that error in the programme. Who are the damn chairs anyway? -
Phil Lord
Take data sources, turn them into OWL with XMLTab from protege -
Phil Lord
The use SWRL to map them to a common ontology, and SQWRL to query -
Phil Lord
System extracts data for MIRIAM guidelines -
Phil Lord
And interaction data that was new to the modeller -
Phil Lord
@Oliver - you commented, but didn't comment further? :) -
Allyson Lister
Phew - that was actually sort of fun. Thanks to the audience! -
Allyson Lister
@Allyson: Tempted! Also frantically trying to keep up with short-seq sig :p -
Oliver Hofmann
Blog post (no, I didn't blog my own talk - this is just a link to the paper and back to this thread):
http://themindwobbles.wordpress.com/2009...
-
Allyson Lister
Slides for this talk are now available from slideshare:
http://www.slideshare.net/allyson...
Enjoy! :) -
Allyson Lister