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Phylogenetic understanding of clonal populations in an era of whole genome sequencing. - http://www.citeulike.org/user...
Sense from sequence reads: methods for alignment and assembly - http://www.citeulike.org/user...
inGAP: an integrated next-generation genome analysis pipeline - http://www.citeulike.org/user...
A bioinformatician's guide to metagenomics. - http://www.citeulike.org/user...
Darwinian evolution in the light of genomics - http://www.citeulike.org/user...
PineSAP--sequence alignment and SNP identification pipeline - http://www.citeulike.org/user...
Computational methods for discovering structural variation with next-generation sequencing. - http://www.citeulike.org/user...
Singapore Genome Variation Project: A haplotype map of three Southeast Asian populations. - http://www.citeulike.org/user...
Avoiding dangerous missense: thermophiles display especially low mutation rates. - http://www.citeulike.org/user...
Genome evolution and adaptation in a long-term experiment with Escherichia coli - http://www.citeulike.org/user...
The theory of discovering rare variants via DNA sequencing - http://www.citeulike.org/user...
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. - http://www.citeulike.org/user...
MAQGene: software to facilitate C. elegans mutant genome sequence analysis - http://www.citeulike.org/user...
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation - http://www.citeulike.org/user...
High frequency of hotspot mutations in core genes of Escherichia coli due to short-term positive selection. - http://www.citeulike.org/user...
Mapping accuracy of short reads from massively parallel sequencing and the implications for quantitative expression profiling. - http://www.citeulike.org/user...
SHOREmap: simultaneous mapping and mutation identification by deep sequencing - http://www.citeulike.org/user...
Comparison of next generation sequencing technologies for transcriptome characterization. - http://www.citeulike.org/user...
Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence - http://www.citeulike.org/user...
How to become a parasite - lessons from the genomes of nematodes. - http://www.citeulike.org/user...
Chimeric transcript discovery by paired-end transcriptome sequencing. - http://www.citeulike.org/user...
HI: Haplotype Improver using paired-end short reads. - http://www.citeulike.org/user...
Mitochondrial and plastid evolution in eukaryotes: an outsiders' perspective. - http://www.citeulike.org/user...
Every genome sequence needs a good map - http://www.citeulike.org/user...
Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly. - http://www.citeulike.org/user...
Snowdrift game dynamics and facultative cheating in yeast - http://www.citeulike.org/user...
GC Content and Recombination: Reassessing the Causal Effects for the Saccharomyces cerevisiae Genome - http://www.citeulike.org/user...
The future of the human SNP identification: which individuals to sequence? - http://www.citeulike.org/user...
Swift: Primary Data Analysis for the Illumina Solexa Sequencing Platform. - http://www.citeulike.org/user...
Managing and Analyzing Next-Generation Sequence Data - http://www.citeulike.org/user...
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