if that offends them tell them amy says to wear your big girl pants next time you go to a conference. unless she's an ornithologist, in which case, fair enough.
- jambina
Based on the two times I attended, years and years ago, I'd say NO. Use it. People who are easily offended really don't belong at the Charleston Conference and should know that by now. (And since the conference encourages the Law of Two Feet, you won't even know whether they leave because they're offended or because they have better things to do.)
- Walt Crawford
OK, to present another side: my boss isn't someone who I'd describe as easily offended, but it made sense to me when she complained a while back about how she just finds it off-putting when a young (for librarian values of young) presenter gets up and is excessively informal and jokey. So it's possible to lose people with stuff like this not because they are so terribly offended, but because they just don't appreciate the style. Think of how many people around here react to Joey Digits, for example.
- Your Neighbor Steve
Man, I so want to change my screen name to Joey Digits right now on this comment, but I figure that might not go over so well, considering the flap we had several months ago over the impersonation thingy...
- Just Joe
Most of them have seen it. Remember to ask permission to use the cartoon.
- ♫410 I Coach 'em Up♫
Actually, you probably don't need to; xkcd is licenced CC-BY-NC.
- RepoRat
Thanks everyone. I've never been to the Charleston Conference before, so I don't know what the culture is like. And I will use it. As RR notes, I don't have to ask permission for non-commercial uses and if I attribute. Here's the license page for xkcd: http://xkcd.com/license.html
- John Dupuis
I don't see a problem with it. The Lumpers vs. Splitters debate is a heated one and that's what the comic gets across.
- copystar
well except for the assholes & douchebags parts.
- DJF
LOL. Anyways, the lumpers vs. splitters isn't my topic. I'm actually trying to make a point that we need to understand the cultures of our patron communities and this cartoon illustrates something about the culture of bio. Just like this one http://xkcd.com/793/ says something about the culture of physics. And yeah, I'm using that one too.
- John Dupuis
MarkUs is a web server to assist the assessment of the biochemical function for a given protein structure. MarkUs identifies related protein structures and sequences, detects protein cavities, and calculates the surface electrostatic potentials and amino acid conservation profile. The results can be browsed by an interactive web interface that allows to integrate Gene Ontology terms, UniProt features, and the Enzyme Classification.
- Deepak Singh
Suggest there's a queue in place. Thanks
- Deepak Singh
It is done processing (though did not send an email when done). Something strange - it identified 4 chains but falcipain-2 does not have that and it does not find an overlap with the original file from the PDB http://www.rcsb.org/pdb...
- Jean-Claude Bradley
The few brief queries I ran did return results in noticeably less time. It will be interesting to see where this leads in the context of the public beta release of Google Wave
- Jill O'Neill
Jean-Claude Bradley presents on The Role of Openness in Scientific Automation: a case for Open Notebook Science at the IJCAI'09 Workshop on Abductive and Inductive Knowledge Development in Pasadena, CA on July 12, 2009.
- Jean-Claude Bradley
First I've heard of it -- seems to run on top of another proprietary database: "Author Resolver profile information is drawn from Scholar Universe, an editorially controlled database of more than 2.1 million profiles of full-time faculty researchers in 2,210 universities and 75 countries."
- Bill Hooker
A nice summary by Christina Pikas that should be helpful to brief people trying to learn about new forms of scientific communication.
- Jean-Claude Bradley
and, if we can not do it, nobody will do it ;-)
- joergkurtwegner
What do you mean by reference architectures? Reference for what? Also, it's not clear how the fierce competition plays a role in this. Why would less competition be beneficial?
- Rajarshi Guha
For example, you could develop a platform for doing something. The actual architecture and standards used can be published, your own implementation can be proprietary. Think MapReduce and BigTable. Google published enough to allow Hadoop, HBase, etc to exist, but their own implementation is proprietary. Think of a data management system you develop for the FDA. That can be one implementation of a reference architecture for data management, where different people can implement in their way (contd_
- Deepak Singh
... around a common set of architectural guidelines and data standards
- Deepak Singh
Competition around a very finite and small user community = things will remain closed and licensing protected for a while. Not from the quality standpoint
- Deepak Singh
Hmm, regarding your FDA example, one could say that a reference is already in place - the FDA guidelines. Though it probably doesn't go as low as formats/data standards etc (?) Actually, I'm not sure that FDA is a great example for this since the cost of failure (security, compliance etc) is very high - it seems that'd be a barrier for multiple implementations
- Rajarshi Guha
I am definitely talking about formats and data standards. The reason I use the FDA example is that it was part of a project I was part of and very much a reality. The FDA would have an application built for them, but others could use internally developed applications that met a certain set of minimum standards (way more common that you think, since almost all clinical databases are custom DBs built to a spec).
- Deepak Singh
Open Access News:- "Interview with Science Commons' John Wilbanks James Turner, ETech Preview: Science Commons Wants Data to Be Free, O'Reilly Radar, February 19, 2009. A podcast interview with John Wilbanks, with transcript.".
- Graham Steel
On Open Access:- JL One area that is clearly under attack is the traditional model of the expensive scientific journal, through mechanisms like the Public Library of Science. How successful is that movement being? JW Well, I mean I would say that it's become an adolescent? Which means it's trying to steal dad's car, and it's acting up. It's made it out of early childhood, that's for...
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- Graham Steel
"I recently had a discussion with a professor from Virginia Tech on why can't we recruit more students for Computer Science majors at the university level, why can't we get women or minority students, and what can be done to turn this around? There is obviously a great deal of interest in recruiting students to our discipline, so why are we unsuccessful?"
- John Dupuis