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Jean-Claude Bradley
My student Brian is trying to generate a 3D model of this protein - can anyone help? AEKYKAKKAKEKAYKKKAKEAKKAKYKAKEAKAYKAEKKAKYAKAKEKAYAKAKEAKAYAKAKAKAEKAKAKAKYAEKAKAAKYAEKAAKYAEAKAKAAEAKYAAEAKEAAKAAEAKYAAKAEAAKYAAEKAAEKYAKAEAAAEAKEAA.
November 28, 2009
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Nir London, Piotr Byzia, Wladimir Labeikovsky and 8 other people liked this
You might want to use Robetta http://robetta.bakerlab.org/ ... I can't since I don't have a dotedu address
- Deepak Singh
Is that a real protein? Or the Hawaiian word for "serendipity"?
- Bill Hooker
I am not sure if this helps- http://swissmodel.expasy.org/
- Ashish
Bill, that's an old Iroquois war cry, if I'm not mistaken.
- Mr. Gunn
Actually it's anti-aircraft fire
- Deepak Singh
http://en.bio-soft.net/3d.html got a nice collection of diverse apps for the task, forgot to mention it when I read the post earlier.
- Zu from AOD
This looks like a coiled-coil protein and even more, something integral to a membrane (but I'm biased towards bacterial proteins, if this one is from Eukaryote, don't pay attention to my comment). If I'm right, judging from the length it should form four-helix bundle in the membrane. As, Neil, I don't think it can be modelled by homology at all.
- Pawel Szczesny
I too was going to suggest robetta - we've had good results but the queues are pretty long ...
- Anna Croft
Thanks everyone! Brian is giving Robetta a try
- Jean-Claude Bradley