Jochen Weile

The microRNA body map: dissecting microRNA function through integrative genomics - http://nar.oxfordjournals.org/content...

Synthetic biology: Bacteria engineered to kill - http://feeds.nature.com/~r...

RT @timoreilly How concentration of wealth has turned our market economy into a centrally planned economy http… (cont) http://t.co/jCLi48S

RT @mattgemmell Now all they need to do is add a hellish multiple-inheritance model for your social circles, and they can call it Google++.

Attending the KnowledgeBlog write-athon today. Will write a tutorial for data integration with the Ondex back-end.

Researchers use comparative genomics to investigate massive EHEC outbreak in Germany. http://news.sciencemag.org/science...

A Toolbox Model of Evolution of Metabolic Pathways on Networks of Arbitrary Topology - http://www.ploscompbiol.org/article...

Too bad I can't be at the #cytoscape retreat this year. The tweets look very interesting.

There seems to be a huge fire in Newcastle... http://yfrog.com/h2j1bwgj

Successfully updated to Ubuntu 11.04. I have to say the Unity interface has improved a lot since v10.10

Towards a genome-wide transcriptogram: the Saccharomyces cerevisiae case - http://nar.oxfordjournals.org/content...

Four-Dimensional Visualisation and Analysis of Protein-Protein Interaction Networks - http://dx.doi.org/10...

Network Archaeology: Uncovering Ancient Networks from Present-Day Interactions - http://www.ploscompbiol.org/article...

Three useful tools I will use for my next Swing GUI: [1] FEST for automatic GUI testing with JUnit (http://fest.easytesting.org/) [2] The new improved Java 6 SwingWorker for thread-safe asynchronous tasks. [3] A. Potochkin's AspectJ script for finding threading rule violations. (http://tinyurl.com/o55yt)

RT @sjcockell: Creating my perfect citation system using LaTeX http://pathogenomics.bham.ac.uk/blog... #greader

RT @mj_bell: Word clouds for all (available) versions of UniProtKB, Swiss-Prot and TrEMBL @ http://homepages.cs.ncl.ac.uk/m...

Why did my paper take 9 months to go through peer-review? I can think of more efficient processes in life that take the same amount of time.

Discovering pathways by orienting edges in protein interaction networks - http://nar.oxfordjournals.org/content...

I foolishly thought contract-oriented-programming would be a useful thing for my current project. So I tried out Contract4J. It turned out to have a zillion transitive dependencies some of which even conflict with each other. :( http://www.facebook.com/photo...

Current progress in network research: toward reference networks for key model organisms - http://bib.oxfordjournals.org/content...

Comparing various probabilistic integration methods for semantic networks.

Functional integration of a metabolic network model and expression data without arbitrary thresholding - http://www.citeulike.org/user...

Yay! My OndexView paper got accepted by Bioinformatics. (Subject to minor revisions)

How Reliable are Experimental Protein–Protein Interaction Data? - http://www.citeulike.org/user...

Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data - http://www.citeulike.org/user...

Updated my netbook to Maverick. Now it's broken. :(

Schockierend und traurig: Studie der Friedrich-Ebert Stiftung: "Ausländer- und Islamfeindlichkeit nimmt zu" http://www.tagesschau.de/inland...

Just wrote 1000 lines of code, running without errors on the first attempt. As Hannibal would put it: I love it when a plan comes together!

Exhausted after a day in London, fighting for science. #scienceisvital

Very interesting article about the connection of the budding process and ageing in S. cerevisiae. http://www.the-scientist.com/2010...