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Lars Juhl Jensen
Research professor in disease systems biology at the NNF Center for Protein Research in Copenhagen. My specialty is data is and text mining.
11/16/09 PHD comic: 'Buzzwords' - http://www.phdcomics.com/comics...
The Warren L. DeLano Memorial Award for Computational Biosciences - http://bytesizebio.net/index...
Shirley Wu and Ruchira S. Datta liked this
Wikipedia editor finally withdraws request for deletion of the DBpedia article http://en.wikipedia.org/wiki...
Reflect featured on the Cell homepage - http://picasaweb.google.com/Lars...
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Thinks that Wikipedia editor is making a fool of herself by suggesting DBpedia page for deletion http://en.wikipedia.org/wiki...
Peter Miller and Michael Kuhn liked this
HMMER 3.0b3: the final beta test release - http://selab.janelia.org/people...
Pull quote: It’s always interesting when people take pseudoscience out of its natural habitat – Islington – and off into a place where the stakes are quite high. Like the polio vaccine scare in Nigeria. Or Aids denialism in South Africa. Or detecting bombs in Iraq, where the New York Times and magician James Randi have uncovered a nonsense of truly epic proportions.
- Lars Juhl Jensen
@pansapiens "Imagine wearing a suit in the summer while doing sports", says the ballroom dancer
Revisiting FOXP2 and the origins of language [Not Exactly Rocket Science] - http://scienceblogs.com/notrock...
Michael Kuhn and Neil Saunders liked this
Nice! LinkedIN can now import your tweets as status updates. I wonder when they added that functionality.
Tip of the Week: GeVo and Genome Comparison - http://blog.openhelix.eu/...
New retweet function in Twitter is "like" in FriendFeed. Hoping for threaded comments next :)
How hard can it be? Everything is linked together by "in reply to...".
- Neil Saunders
Indeed. And if they implement that, Twitter+TwitterFeed will give essentially the same functionality as FriendFeed, since virtually all the sources aggregated by FriendFeed provide RSS feeds.
- Lars Juhl Jensen
The namazu fulltext indexer - http://bergman-lab.blogspot.com/2009...
Finding Function in Biological Circuits - http://www.scientificblogging.com/adaptiv...
STRING 8.2 and STITCH 2.0 released - http://string-stitch.blogspot.com/2009...
Google Wave is coming of age: I have just received the first spam
Google opens up its JavaScript development toolbox to all - http://arstechnica.com/open-so...
Peter Miller and Ruchira S. Datta liked this
Building Chempedia: A RESTful Web API for Chemical Information - http://depth-first.com/article...
Peter Miller liked this
Building Small Curated Databases versus Large Data Collections: ChEBI vs ChEMBL - http://www.chemspider.com/blog...
Peter Miller, Konrad Förstner, Michael Kuhn and Duncan Hull liked this
"It is MUCH harder to curate larger databases"
- Duncan Hull
Predicting new molecular targets for known drugs - http://www.nature.com/nature...
Ed Millard, Khader Shameer, Matthew Todd and 10 other people liked this
The title is a bit generic, isn't this what Phil Bourne's been doing?
- Ruchira S. Datta
I think this is an extension of their (Kieser et al) previous work with SEA
- Rajarshi Guha
Nature has a story on this in their news section: http://www.nature.com/news...
- Michael Kuhn
Is this using Lasso or similar program? Interesting appearance of DMT as a molecule of interest - I have a student doing a report on it this term http://getcheminfo.wikispaces.com/Adam+My...
- Jean-Claude Bradley
Uses SEA http://sea.bkslab.org/
- Rajarshi Guha
Thanks Rajarshi - looks like another cool online resource to explore
- Jean-Claude Bradley
That's cool. How likely is the top match to be a real inhibitor?
- Andrew Lang
We're trying to run our virtual library of Ugi products we can make in my lab http://usefulchem.wikispaces.com/UClib00... I hope that isn't too large a task
- Jean-Claude Bradley
We did some of this validated cross-target prediction also http://www.nature.com/doifind...
- Matthew Todd
That's awesome Mat! What would be the next step to processing our Ugi product library on the TDI kernel?
- Jean-Claude Bradley
RT @konradfoerstner "Secret copyright treaty leaks. It's bad. Very bad." http://www.boingboing.net/2009... (via @FranziskaHeine) #ACTA #web
Anders Norgaard liked this
@Villavelius I often have the feeling that thinking clearly is what causes me to become grumpy ;)
Analysis: Limited agreement among lists of Cdc28p substrates - http://larsjuhljensen.wordpress.com/2009...
Neil Saunders and Pawel Szczesny liked this
All three manuscripts submitted for the 2010 NAR database issue have now been accepted. Happy days :-)
Hari, Mike Chelen, Peter Miller and 4 other people liked this
Oh bother - talking to NAR about writing something on data licensing was on my list of things to do from last year. Guess I missed the boat again :-(
- Cameron Neylon
Cameron: don't worry, data licensing will not stop being in need of explanation any time soon ;D
- Mike Chelen
Why thankyou Mike, you really know how to brighten my day up...
- Cameron Neylon
$5,000 Open Access fee in Nature Communications, and even then you can only choose between CC-BY-NC-ND and CC-BY-NC-SA?!
Mike Chelen, Pedro Beltrao and Anders Norgaard liked this
it's either a huge increase or huge decrease in the open access fee for nature publishing, depending if you consider their old price to be infinity or zero :D
- Mike Chelen
Dual regulation by pairs of cyclin-dependent protein kinases and histone deacetylases controls g1 transcription in budding yeast. - http://www.ncbi.nlm.nih.gov/entrez...
Mike Chelen liked this
Farhad Manjoo thinks Google Wave is too complicated - http://www.slate.com/id...
Mike Chelen liked this
Drupal and PubMed - http://archive.nodalpoint.org/2008...
Mike Chelen liked this
nicely done explanation of how Drupal can import content via RSS from many sites such as PubMed
- Mike Chelen
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