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Engelbart: Augmenting Human Intellect (1962) - http://www.invisiblerevolution.net/engelba...
The Wired Campus - 'The Last.fm for Research Papers' Tops 100,000 Users - The Chronicle of Higher Education - http://chronicle.com/blogPos...
Nice short writeup on Mendeley in the Chronicle. - Mr. Gunn from Bookmarklet
Tenurometer: Add-on and Web Service for Academic Impact Analysis - http://tenurometer.indiana.edu/
"Tenurometer is a social tool to facilitate citation analysis and help evaluate the impact of an author’s publications." A firefox add-on which works with Google Scholar. Looks interesting. - Mr. Gunn from Bookmarklet
Oof. Unfortunate name. Guess there is no reason to measure impact of those already tenured ;) - Todd Harris
Looks to be limited to citation analysis as well which is a little unfortunate. Would like it more if they were explicitly collecting other social data around the papers and the users. - Cameron Neylon
Tried it. Not bad. Publish or perish http://www.harzing.com/pop.htm returns more data, but is standalone. - Björn Brembs
Can someone explain me how to use the plugin? I installed it, but see no menu, icon, or whatever show up... - Egon Willighagen
In firefox, go to View/Sidebar - cute tool - Rajarshi Guha
Ah, there it is... not sure how I missed that... thanx! - Egon Willighagen
Tenurometer: Add-on and Web Service for Academic Impact Analysis - http://tenurometer.indiana.edu/#
"Tenurometer is a social tool to facilitate citation analysis and help evaluate the impact of an author’s publications." - Mr. Gunn from Bookmarklet
The Spittoon » 23andMe & Navigenics’ Open Letter to Nature - http://spittoon.23andme.com/2009...
"Ng et al. recommend “that DTC companies report the proportion of the genetic contribution of a disease that can be attributed to the markers used in their test…” There are many metrics that can be used to describe the completeness/accuracy of these types of tests. However, each of them has advantages and disadvantages, and all can be misinterpreted by experts and laypersons alike. Furthermore, the call for such information must be put in context with currently implemented non-genetic risk communication. For example, does your doctor know/communicate what percentage of the total risk of cardiac disease is contributed by your cholesterol level?" - Mr. Gunn from Bookmarklet
@SusanTellem Science-Based Medicine » 9 Reasons to Completely Ignore Joseph Mercola - http://www.sciencebasedmedicine.org/...
Someone asked me on twitter about him. - Mr. Gunn from Bookmarklet
www.phdcomics.com :: View topic - The Mol. Bio. techniques resources Index - http://www.phdcomics.com/proceed...
Great thread talking about online protocol databases - Mr. Gunn from Bookmarklet
... and then what? : The Book of Trogool - http://scienceblogs.com/bookoft...
"It can be difficult to convince present-focused researchers to give a long-term perspective, such as that of a librarian or archivist, the time of day. (So to speak.) Here's my favorite way to do it: the "… and then what?" game." Someone who shares your name starts to publish some really bad papers, and lots of them... - Mr. Gunn from Bookmarklet
Comments on ASM launches new Open Access Journal w/ some aspects of #PLoS and PNAS - https://www.blogger.com/comment...
"Unlike some other top-ranked journals, mBio won’t ask authors to perform months more of additional experiments with no promise of publication. Our philosophy is that if the author needs to do a lot more work to get a paper into mBio, it’s better to get a clear rejection and have the choice of doing more work and resubmitting to mBio or of submitting to another journal." - Mr. Gunn from Bookmarklet
Why experts are morons: a recipe for academic success « Finite Attention Span - http://finiteattentionspan.wordpress.com/2009...
"You need to be well-behaved. (If you don’t behave, you’ll be labelled disruptive and that will do exactly what you think it will to your chances of academic success. Yes, even if you are bored because lessons are too easy.)" I know it sounds very "punk-rock trite" but there's a kernel of truth in this. I've been disruptive in some situations where I simply didn't have the political savvy to recognize what the power structures were and ended up undermining them. This would have been very much to my detriment if I wanted the blessing of the group (and I did, so it was, but I'm better now), so it's very important to recognize when you need the blessing of the group, and when the group needs some disruption for the benefit of the larger interests the group no longer adequately represents. People often rail against amateur efforts, but sometimes disruption by a bunch of experts is exactly what is called for. (Journalism, academic publishing, and *ahem* the field of stem cell research - more on this soon). - Mr. Gunn from Bookmarklet
Moving article-level metrics forward - Gobbledygook - Martin Fenner's blog on Nature Network - http://network.nature.com/people...
"It would be in the interest of PLoS to combine their article-level metrics with an author identifier as soon as possible, most likely the proposed CrossRef ContributorID, rather than the Elsevier Scopus Author Identifier or the Thomson Reuters Researcher ID." - Mr. Gunn from Bookmarklet
Our Team | World Association of Young Scientists - http://www.ways.org/en...
Our Team | World Association of Young Scientists
"Daniel Mietchen - Open Science Policy Director" Congrats, Daniel! - Mr. Gunn from Bookmarklet
Thanks. As for the site being cluttered, we welcome suggestions. - Daniel Mietchen
Just an initial impression: "Oh, this is a site talking about some initiative. Oh, wait, there's a forum and a place to register so maybe the...wait, here's an activity stream from members!" Seems like the front page is going in a bunch of different directions at once. - Mr. Gunn
You certainly got a point there but the site is indeed an umbrella platform for initiatives that go into very different directions, e.g. http://pyrn.ways.org/ and http://giraf-iffd.ways.org/ , and the parent site aggregates that content and provides the forum to discuss matters of interest across the different initiatives. - Daniel Mietchen
I like what you're doing there, but I think you may want to think about usability. What does a prospective member think when they land on the page? Is the value proposition clear, or will it be just another site they'll have to sign up for, track activity on, etc. - Mr. Gunn
I need some feedback/career advice.
Many of you know I've been working with Mendeley as a sort of ambassador/community liaison. I started this because I've always felt a little shut out from contributing to open science/open access/open data because I don't work for a publisher, don't really write code, and wasn't in a job where I could openly share data. This was a way to influence how things develop by promoting the people who "get it". - Mr. Gunn
I had to quit for the "real job" a little while back and found not only that I had more time to work for Mendeley, but that I started getting other offers/opportunities also. - Mr. Gunn
Now I've got a newborn daughter and am liking the time I can spend at home with her, which raises the following conundrum: Can I do more of this community liaison work for companies that support/promote open access and put my research career on hold, or is there not any future in this? - Mr. Gunn
Can I trust the friends and colleagues I've met on here to be able to have a real discussion with me, keep me honest, and tell me if I'm backing the wrong horse as I take on more clients, or would I be considered a sell-out? Would people believe that my opinions still come from me and my experiences, or would people just think "You're only saying/supporting that because they're paying... more... - Mr. Gunn
Do you think there's room to grow in this kind of role or am I just wishfully thinking that I can make my own job in this tough economy and get to spend time with my daughter too? - Mr. Gunn
I really believe this is a way I can contribute to changing how science is being done, opening up the process, disintermediating scientific discovery, and all those noble sounding things, but do you buy it, or do you think I'll not only become corrupted by money but lose my relevance because I'm not really doing science anymore? - Mr. Gunn
Can I help companies that don't quite get it to improve and become better and more responsive to their community of users or will I lose touch? - Mr. Gunn
I will be saying nothing works better than inspiring people by setting examples, I will not go with holding my research career even it is not working well as long as I have passion for discovering something. But there are certain realities and money is one of them. Ambassador/community liaisoning is other way to contribute back to the science, but it will be too early to give up your... more... - Abhishek Tiwari
Mr. Gunn. You can absolutely do so, but as you note, you cannot do this with one client. It will have to be a consulting/pundit role (you should probably have a chat with Paul Miller at some point http://cloudofdata.com). The life science industry will be challenging given the limited opportunities, and in this economy, this will not be a walk in the park. As to whether you have to be... more... - Deepak Singh
And we'll tell you if you're being an idiot. It also depends on what you really want to earn. You're not going to get rich doing this, at least not quickly. - Deepak Singh
Abhishek, I could cite all the times when I've recommended Papers or Zotero instead because it really was better for what the person was looking for as evidence that I don't always have to say what the official line is, but that wouldn't illustrate all the discussions I've had where the company point of view _became_ my point of view. This is exactly the kind of discussion I want to be... more... - Mr. Gunn
Thanks Deepak. I know you will, and I'm not looking to get rich. I'm looking to do work for people I believe it, be a force for good, and at least for the moment, spend more time at home with my daughter. - Mr. Gunn
Mr. Gunn, it will only taint it if you let it, although there will people who'll always be skeptical. As long as you are honest and present your point of view rationally, you'll be fine - Deepak Singh
I'd like to think that being open and transparent online helps illustrate my biases, too. - Mr. Gunn
Way outside my area of expertise, but I would think the "consulting/pundit" thing that Deepak mentions would involve lots of travel, especially to start. Not sure how conducive that is to spending more time at home... - Andrew Su
Andrew, missed that bit. There would be a fair bit of travel - Deepak Singh from iPhone
Tough call MrG. I'm not concerned about you selling out, plus I will call you out if I think you are sliding into that trap (as, I'm sure, will the rest of the FF posse). My larger concern would be whether you can make a living that way. Is there a more regular (but part-time) gig that you could get to buffer the difficulties of forging a new path? For instance, do you write easily and... more... - Bill Hooker
Having a part-time gig would allow you more freedom to take risks and experiment, and could be phased out as and when your liaison/consulting work grew. - Bill Hooker
Bill, that's a really great idea. My current commitments are only part-time, so having something more steady would both help the bottom line and insulate me from selling-out criticism - "I don't need to do this." Please, put me in touch. - Mr. Gunn
the ultimate evidence for or against bias is behavior, would such a position restrict or inhibit assuming a critical perspective? - Mike Chelen
What fun would that be, Mike? I just wanted to do a sanity check against my friends and colleagues here to make sure that at least some of them would promise to call me out if I started to not make any sense or drift away from the principles of openness this community takes as a fundamental principle. - Mr. Gunn
Interesting situation! My take is that people who have no history of interaction with you, will not spend a lot of time looking you up online. As soon as they know you're being paid to do this, you'll be a sales rep - which means there isn't even any need to look you up, they already know who/what you are. Thus, IMHO, no online history will get you out of the sales rep box. - Björn Brembs
I agree with Bill's suggestion, and also his non-worry about bias. Or rather, we're all biased, but you don't come across as a sell-out company mouthpiece to those who know you, so you can let that slide. Bjorn isn't tender, but he's right. Either way, you won't change it by adding on more opportunities to be a facilitator. And forging your own path to be more with your family - having been there, I would say you won't regret it later. One always has career regrets, but that's because we only have one life. - Heather
Mr. Gunn. A full time liaison for a company will effectively make you sort of a sales rep. I have been a sales rep myself - which was a valuable learning experience, but I suspect, like me, not one you would fit comfortable into for a longer period of time (several years). When I left university, my friends and colleagues told me that I had a time-limit of 1-2 years to get back into... more... - Nils Reinton
Thanks, Nils, Heather, Björn. My intent is not to work full-time for a specific company, and I'm not doing that now. My intent is also to talk more about ideas and trends and less about specific products. Although I do spend a fair amount of time recommending Mendeley, I think Zotero shares their mission and I just personally prefer Mendeley. I used Zotero to write my first paper and it came down to me just wanting a desktop, full-screen app instead of their browser add on. - Mr. Gunn
Björn - We all have our various reasons to believe what we do and say what we do. In my role, I'm not being paid to say anything or to have a certain opinion. In fact, I think where I disagree with the Mendeley guys is more valuable to them than where I agree, because what they're basically paying me for is my insights as a scientist who knows the field and keeps current with... more... - Mr. Gunn
I know I can't speak for anyone, and I'm not appointing myself spokesperson, but if I spend a lot of time listening to, talking about, and synthesizing ideas, and I can also effectively market those ideas to people who need to hear them (that is, companies who want to listen and adapt), isn't that a win? Couldn't that be my way to make a positive contribution to open access and linked data and personalized medicine and these causes that I already believe passionately in? - Mr. Gunn
"Couldn't that be my way to make a positive contribution to open access and linked data and personalized medicine and these causes that I already believe passionately in?" YES, absolutely, you are already doing this very well. If you can make a living out of it, I salute you :-) - Nils Reinton
Perhaps consider not just consultancy for companies, but also undertake work for public sector agencies (major libraries or funders), charities or not-for-profit companies. - Frank Norman
Mr. Gunn - sure I think such a person would definitely be worthwhile to us! I was referring to people who do not know you: if you approach them and tell them you work for company X, my bet is that most of them will think "ah, he's a failed scientist trying to get me to use their products". Of course, this doesn't stop people from using company X's products (or sales reps would die out... more... - Björn Brembs
this is a great thread, Mr. Gunn, cheers for starting it, very interesting points, everyone; I would like to second Nils and Frank, and I think that some journals might also be interested in your advice (and community liaison work) and that this would certainly be a great service for anyone near to being an OA and linked data addict - isn't this a pretty wide range of users? we might create a list of arguments that you might wish to choose from when talking to journal publishers - test them on me ;-) - Claudia Koltzenburg
Mr Gunn...you might know me from the ChemSpider system. For almost 3 years ChemSpider was run as a "for the community" project at my cost. i.e. My wife and kids lost a lot of access to me, despite the fact that I worked from home. It did NOT pay any bills...it just about covered costs. No, I was a consultant for a number of companies and worked hard for them, traveled a lot and used my... more... - Antony Williams
OT b/c it's blog not job related *but* I would cite this FF thread at some stage in this one. http://ff.im/YB4p from Feb '09. - Graham Steel
Nils, thanks! Frank - that's a great idea. Can anyone put me in touch with someone at one of those agencies/companies? Björn - I see what you mean. Online rep doesn't translate offline automatically. Claudia - I've got a series of arguments, gleaned over the years from participation here and elsewhere. Can I send you an email? Antony - yes, I'm familiar with your work, and I have a... more... - Mr. Gunn
Mr. Gunn, one thing I've noticed in recent conversation with doctors (not academic MDs) is that most do not know much at all about OA, aren't sure what to make of a statistics-rich, data-driven science environment (or how to connect that data to actual human patients), and are leery about packages being hawked to them. Many are similar to me in age, meaning they didn't grow up in a... more... - Mickey Schafer
Well, I see myself being able to help in explaining these issues, but I don't think I'd get too far hawking products. I'm just not that kind of person. - Mr. Gunn
Even products you truly believed were worthwhile? - Jack (a.k.a. Jeber)
Yeah, I just don't think I'm the salesman type. I think I'm more effective developing ideas than products. - Mr. Gunn
You don't have to be a salesman to develop products. Product development requires a better understanding of customer needs than anything else out there. Being a product manager was one of the most satisfying jobs of my life - Deepak Singh from IM
Mr. Gunn -- I wasn't suggesting that you represent product -- actually, I was thinking more in terms of a "knowledge broker" -- the slow adoption of some technologies (whatever they may be) is often b/c the persons needing the tools don't know how to evaluate them -- sometimes, they may not know how to evaluate their own needs. Having an expert who can help someone understand the landscape, help them make choices based on needs (as opposed to sales pitches) is a very valuable resource. Just a thought! - Mickey Schafer
Another area that is worth looking at, though probably represents a short term play, is that there are lots of people out there putting out calls for tenders to do small research projects in the Social Media/Publishing/Data/Science space. Again its patchy, and not regular but with some reliable money coming in from e.g. editing and writing this kind of work could do two things, firstly... more... - Cameron Neylon
MrG, did you get my email? I sent it to a gmail address that I have listed for you in my address book. - Bill Hooker
Yes, I got the one you sent and I really appreciate it. I do plan to follow up when I get back into town. - Mr. Gunn
Just Google It - screenshots of Google search autocompletions in all their raw honesty - http://justgoogleit.tumblr.com/
Oh, that's terrific. - Neil Saunders
I'm busy preparing to the stem cells meeting in Austin so I don't have time for the official post, but I would like to announce before any more time goes on that I've agreed to serve in a consulting role for Biodata http://twitter.com/biokm to advise them as they grow on things that are of interest to the community of life scientists.
I thought about this for some time, but it seems like it fits well alongside what I'm doing for Mendeley. My aim is to help two good companies become great. - Mr. Gunn
Been using http://twittertim.es for the past couple weeks and I've been really impressed at the service and @BoraZ's fantastic signal/noise!
Thank you. I am trying to do as much mindcasting and as little lifecasting as possible. Also, last night was the last edition of Tweetlinks on my blog - by now, those who realize that I post good links on Twitter have moved there already, those who won't never will. - Bora Zivkovic
Free and open-source repository software - OAD - http://oad.simmons.edu/oadwiki...
Le Web announces the list for the startup competition - http://eu.techcrunch.com/2009...
Perhaps this is a testament to the insular nature of silicon valley or perhaps an indication of how important PR is, but I haven't heard of but a few of these Eurpoean startups - Mr. Gunn from Bookmarklet
BookBlog » Blog Archive » The end of information, the return of conversation - Adina Levin’s weblog. For conversation about books I’ve been reading, social software, and other stuff too. - http://www.alevin.com/?p=1875
"Another need is to create curated conversations out of the raw material of the discussion" - Mr. Gunn from Bookmarklet
hangingtogether.org » Blog Archive » Academic Library Manifesto - http://hangingtogether.org/...
"Support for the Research Process: An Academic Library Manifesto (PDF) was just released by the RLG Partnership Research Information Management Roadmap Working Group." - Mr. Gunn from Bookmarklet
amednews: Journal editors propose detailed disclosure form for authors :: Nov. 9, 2009 ... American Medical News - http://www.ama-assn.org/amednew...
It used to be that conversation only happened in face-to-face interaction or phone calls, while printed and published work was slower and more serious. Rarely did someone preface their conversations with (disclaimer, I think this because ...) because it was just a conversation, there wasn't a high degree of formality about it. It made complete sense to ask someone to disclose their conflicts before publishing a serious print article because it was a formal statement that would last and be seen by others than the immediate parties to the conversation. Now we've got both fast, conversational material existing right along side longer, more serious stuff, and they're all just as permanent and just as discoverable, so the framework they propose just sounds a little dated to me. Perhaps what we need is a new set of default assumptions? - Mr. Gunn from Bookmarklet
Has anyone played with http://feedzero.com ? I'm currently training my set of feeds, and haven't quite got to where the recommendations make up for the web-only interface. Friendfeed still beats it.
intriguing, what feeds do you put in there? I'm trying with TOCs of journals. How do you compare FF with feedzero? Didn't know FF had bayesian or other algorithmic filters. - aarontay
FF doesn't have bayesian filters. They do use a ranking for their "best of day" feature, but it mostly comes from user activity, so the comparison is between purely algorithmic rank and social filtering. So far, social filtering FTW! - Mr. Gunn
As far as what feeds I'm putting in, I just uploaded my whole OPML file. Took some time to sync, but works pretty well. - Mr. Gunn
Well social filtering is great if it's things people are reading, but with Tocs of journals, doubtful FF can help you filter. - aarontay
I'm not using bayesian filters for my "normal" rss blog feeds, think social filtering will work better, but for tocs of journals, where i'm looking for articles in my research area, i dont know any peers in this area, so bayesian filter is the only alternative - aarontay
But it can! If my contacts are reading the same journals I am, and feeding in here things they're bookmarked using a bookmarking service, it brings those things to my attention. - Mr. Gunn
Yes, that's my problem, I don't know any contacts working in the same area (besides my supervisor!), a problem facing many starting grad student, so we can't rely on social filters. Also i suppose it's a lazy way to prioritize journals, if you want to at least glance at them if you dont trust your social filters. - aarontay
Deepak had some comments on learning to trust your social filters a while back, but yeah, it's hard sometimes. In other news...citeulike has a recommendation feature and Mendeley's great recommendations feature is coming soon. - Mr. Gunn
Here's the question, are these recommendations based solely on social activity? What if you are working in an area that no-one else is (very likely particularly these days where a small percentage of people are only on such networks). Machine learning techniques like bayesian filtering would be very helpful. - aarontay
Yes, that's certainly true. I always think of it as Bayesian filtering helps you find the best stuff you already know you like, whereas social search helps you find stuff you didn't know you were looking for, - Mr. Gunn
I haven't, but now I'm going to. Looks interesting. - Bill Hooker
In case you are interested in bayesian filtering, the other alternative is suxtor http://icbl.macs.hw.ac.uk/sux0r20... , which ls less commercial. There's a interesting project going along http://bayesianfeedfilter.wordpress.com/ . - aarontay
I think I might have originally seen that from one of your tweets, actually. - Mr. Gunn
Yes. I'm working on a blog post on bayesian filtering of rss feeds actually.. several alternatives - aarontay
I keep hearing rumors of a product that will blow services like feedzero away, but haven't seen so much as a screenshot yet. - Mr. Gunn
You can setup your own install, or just use the one hosted by Heriot-Watt University. The people there are pretty interested in feedback. main disadvantage so far, can't import opml! Also feeds needs to be approved by admin. - aarontay
No OPML import is a major dealbreaker for me, unfortunately. - Mr. Gunn
There's a beta- invitation only feedscrub/ rss bayesian filter, you can get the invitation code on some site, techcrunch or something. 1 got 5 invites if anyone wants them. the free version does only 5 feeds though, but the premium allows opml import. Also playing with hacks like converting rss feeds to POP/IMAP/NNTP then using POPFILE for bayesian filtering. - aarontay
Converting posts to emails and filtering using the more well-developed tools available for spam is a interesting idea, but it's kinda hacky, isn't it? My income of feed items is way larger than emails - wouldn't that make popfile choke? - Mr. Gunn
Yeah it's hacky. I've used Popfile for a couple of years in the past before i switched mostly to gmail, i remember going on holiday and coming back and it could handle hundreds of mails incoming at a time (think the mail server timed out first), but it's possible your rss feeds exceeds that by far. God knows i have thousands of unread articles in google reader. - aarontay
Yeah, thousands, at least. There are whole categories of feeds I don't read directly, only filter/search. - Mr. Gunn
Cleaning Up the Clutter Online - Pogue’s Posts Blog - NYTimes.com - http://pogue.blogs.nytimes.com/2009...
"Readability is far more than an ad blocker. It addresses multiple unpleasant trends in Web layout these days: type getting too small, layouts getting cluttered and complex, text overlapping with graphics, ads interrupting the flow of the prose, and so on." - Mr. Gunn from Bookmarklet
David Byrne Journal: 10.24.09: Internet Antichrist - http://journal.davidbyrne.com/2009...
"One man foresaw a global network before any such thing was close to being possible. J. C. R. Licklider (sounds like a character in a Coen bros movie!) envisioned, in a 1960 paper called Man-Computer Symbiosis, "A network of such [computers], connected to one another by wide-band communication lines…[which provided] the functions of present-day libraries together with anticipated advances in information storage and retrieval and [other] symbiotic functions." In other words, he saw it all coming." - Mr. Gunn from Bookmarklet
Readability - An Arc90 Lab Experiment - http://lab.arc90.com/experim...
The lone Republican who voted for health care reform was Representative Joseph Cao. Give him some #GovLuv! - http://govluv.org/offices...
I've Tested at 23andMe, Now What? - http://www.isogg.org/23andme...
Some seemingly simplistic tools on this page. - Mr. Gunn from Bookmarklet
Still-murky copyright treaty could change web as we use it - thestar.com - http://www.thestar.com/enterta...
"The future of the Internet in Canada may have been decided in Seoul, Korea, this past week." I don't usually go in for hyperbole, but this does sounds really bad. - Mr. Gunn from Bookmarklet
My son has cancer. He can't go into day care because of unvaccinated children. - By Stephanie Tatel - Slate Magazine - http://www.slate.com/id...
"Ordinarily I wouldn't question others' parenting choices. But the problem is literally one of live or don't live. While that parent chose not to vaccinate her child for what she likely considers well-founded reasons, she is putting other children at risk. In this instance, the child at risk was my son. He has leukemia." - Mr. Gunn from Bookmarklet
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