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Ruby for Bioinformatics

Ruby for Bioinformatics

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Administrators

Jan Aerts
Matt Wood
Michael Barton

Members

Anthony Underwood
Deepak
KEJIE LI
Lars G. T. Jorgensen
Ling-Fung Tang
Matias Piipari
Neil Saunders
Pawel Szczesny
Rebecca Holz
Zaki Manian
Ruby for Bioinformatics
Ruby. Bioinformatics.
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Neil Saunders posted a link
SourceForge.net: TIMTAM
18 minutes ago - via Reshare - Link
Reshare from the Life Scientists room. - Neil Saunders
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Deepak posted a message
“Silly question ... lets say you clone a git project (using the public clone url) into a local repo. Later you fork the same project on github and you want to pull in that into a local repo (I'm actually thinking of deleting the original clone repo locally). Would that create any issues.”
5 hours ago - Link
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Goodbye MapReduce, Hello Cascading
Friday at 11:32 pm - Link
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10 Promising JavaScript Frameworks
10 hours ago - Link
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Umbrella Today?
10 hours ago - Link
Nascent: Science Blogging 2008: London
10 hours ago - Link
two more »
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PauloNuin posted a message
“Looking to setup RoR in our server. What configuration, modules, plugins recommended?”
Friday at 5:17 pm - Link
A common setup would be Apache 2.2 with Mongrel. Passenger (mod_rails) is an attractive alternative, especially for lower traffic low maintenance web sites. Capistrano for deployment is highly recommended. - Martin Fenner
Thanks, I will try that. Always good to start with the ideal configuration ... - PauloNuin
Nginx with Mongrel is also a good alternative. Definitely one of the more popular ones in the RoR userbase on EC2. But I've heard good things about Passenger too. - Deepak
The "classic" setup with Apache 2.2 and Mongrel is described here: http://blog.codahale.com/2006/... - Martin Fenner
Definitely give mod_rails a go if you're starting up: works effortlessly, and is ready for production use. - Matt Wood
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Large Hadron Rap: Not long to go until the collisions start....
Saturday at 1:49 pm - Link
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Era of scientific secrecy nears its end
Saturday at 8:00 am - Link
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Cappuccino
Friday at 1:10 pm - Link
How to report a bug in a Mac OS X application
Friday at 12:54 pm - Link
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Blog
an entry from Riding Rails - home
Rails 2.1.1: Lots of bug fixes
Friday at 2:19 am - Link
Blog
an entry from Riding Rails - home
Guides Hackfest
Thursday at 8:16 am - Link
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Matt Wood posted a link
“Just getting ready for Matt's talk: "Genomes on Rails"”
Thursday at 5:30 am - via Reshare - Link
This originally appeared in the Life Scientists room - thought it might be interesting here too. - Matt Wood
Blog
an entry from Riding Rails - home
Bratwurst on Rails at RailsConf Europe
July 29 at 10:01 am - Link
I'll be there. Anyone else attending RailsConf Europe? - Matt Wood
Me too! - arfon
I will be attending the conference starting Wednesday. Any interest in a dinner that day? - Martin Fenner
Cool - dinner sounds good to me. - Matt Wood
I've organized a dinner on Thursday, the last day of the conference: http://network.nature.com/foru... - Martin Fenner
Reminder: Nature Network/RailsConf dinner tonight (Thursday Sep. 4) 8 PM at Honigmond: http://maps.google.de/maps?f=q... - Martin Fenner
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Martin Fenner posted a message
“DHH starts RailConf Europe Keynote: living with legacy software”
September 3 at 12:09 am - Link
This was more of a philosophical talk. Some of it might also apply to science. Most of our experimental data are soon out of date (= legacy data). How do we handle this situation? Re-starting from scratch is not a good strategy in science and software development. - Martin Fenner
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Paul Bacchus posted a link
Building the Never Blocking Rails, Making Rails 12X Faster
Thursday at 3:14 am - via Bookmarklet - Link
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Martin Fenner posted a message
“RailsConf Europe: Rob Lee talks about "adding semantic markup to your rails app up using DBpedia and ActiveRDF".”
Wednesday at 1:51 am - Link
HOw was that talk? - Deepak
It was good. I learned a lot of the basic stuff and how to use semantic tools with Rails. The abstract of the session is here: http://en.oreilly.com/railseur... - Martin Fenner
I thought I recognised that name (Rob Lee); I met him at this years Barcamp in Leeds. - Paul Bacchus
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Deepak posted a link
ne•o•phil•i•ac » Blog Archive » rubybroker-ec2 and Merb 0.9.5
Wednesday at 7:48 pm - via Bookmarklet - Link
Still trying to figure out if I should skip Rails and jump straight into Merb - Deepak via Bookmarklet
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Paul Bacchus posted a link
Ruby on V8 « Marc-André Cournoyer’s blog
Wednesday at 3:57 am - via Bookmarklet - Link
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Google Launches Cloud Operating System, Calls It a Browser: Tech Ticker, Yahoo! Finance
Wednesday at 10:53 am - Link
Blog
an entry from Riding Rails - home
Rails 2.0.4: Maintenance release
Wednesday at 2:43 am - Link
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Deepak posted a link
EC2 on Rails
August 28 at 6:46 pm - via Reshare - Link
There is an EC2 BOF tonight at this year's RailsConf Europe. Cool. - Matt Wood
I would love to watch Simone give a BOF, given his wonderfully flamboyant personality :) - Deepak
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"Google Chrome is clean and fast. It gets out of your way and gets you where you want to go"
September 1 at 2:46 pm - Link
Blog
an entry from Green is Good
Science Blogging 2008
August 29 at 10:13 am - Link
Matt ... had thoughts around Laconica yet? - Deepak
I think it's good to see open options for microblogging, especially for those who wish to do so in a more closed, controlled environment. Less lock-in, etc. I don't see it stealing much of Twitter's thunder in the long term though. - Matt Wood
Likewise. Love the concept, especially in the controlled scenario. Not planning to leave Twitter any time soon. - Deepak
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Photos from Sciblog on Flickr.
August 31 at 1:43 pm - Link
What’s the Big Deal About Jaiku?
August 31 at 1:42 pm - Link
Configatron
August 31 at 1:41 pm - Link
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Deepak posted a link
Setting up a Ruby 1.9 Sandbox on Leopard - Blog - Me Dev, You Jane
August 30 at 11:39 am - via Reshare - Link
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Deepak posted a link
Rail Spikes: How to fix your Rails helpers
August 30 at 11:40 am - via Reshare - Link
Great suggestions for removing the clutter from your rails apps - John Duff
Blog
an entry from Riding Rails - home
Tell your Rails story
August 30 at 8:32 am - Link
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Science Blogging 2008
August 29 at 10:14 am - Link
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Deepak posted a link
Capistrano: Capistrano 2.5.0
August 29 at 9:05 am - via Bookmarklet - Link
Cap 2.5 is out - Deepak via Bookmarklet
Not tried this yet, after a turbulent 2.2 -> 2.3 upgrade a while back. Anyone had any success? - Matt Wood
Blog
an entry from Riding Rails - home
Twitter account
August 29 at 6:40 am - Link
Rails has an account on twitter, which is run on Rails. But twitter is not working for this account. I feel recursion... - Michael Barton
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