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Ruby for Bioinformatics

Ruby for Bioinformatics

Ruby. Bioinformatics.
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Deepak Singh
Deepak Singh
Fwd: adamwiggins's sumo at master - GitHub - http://github.com/adamwig... (via http://friendfeed.com/mndoci...)
Ruby for Bioinformatics
Mike Chelen
Fwd: Call for help: is anyone interested in helping me maintain the ruby ensembl api? Very little work, but need contact point #ruby #ensembl (via http://friendfeed.com/jandot...)
Ruby for Bioinformatics
Michael Barton
New York Times. For Writing Software, a Buddy System - http://www.nytimes.com/glogin...
Michael Barton
Simple Record, activerecord for amazonDB - http://github.com/appoxy...
Michael Barton
Ruby for Bioinformatics
Mike Chelen
Ruby for Bioinformatics
What's New in Edge Rails: The Security Edition - http://weblog.rubyonrails.org/2009...
Ruby for Bioinformatics
Ruby on Rails 2.3.4: Security Fixes - http://weblog.rubyonrails.org/2009...
Ruby for Bioinformatics
Ruby for Bioinformatics
Ruby for Bioinformatics
Nakao M.
Is that a jet taking off? No, just my fans as the RDoc installs :-) - Neil Saunders
Ruby for Bioinformatics
Ruby for Bioinformatics
Three reasons to love ActionController::Responder - http://weblog.rubyonrails.org/2009...
Ruby for Bioinformatics
Ben Woodcroft
A Grease Monkey script for getting rid of the annoying frames from Wiley HTML fulltext webpages - http://userscripts.org/scripts...
Please post only to relevant groups. I don't see how this is related to Ruby or bioinformatics. - Neil Saunders
I didn't find it, I made it. But I agree, it isn't properly filed. apologies. - Ben Woodcroft
imabonehead
"Mark Wotton wrote Hubris, a bridge which makes it possible to call Haskell code from Ruby. You'll need to install ghc which comes up with Haskell platform in order to be able to compile jhc (John's Haskell Compiler). You should notice that jhc will only work under Linux or Mac." - imabonehead from Bookmarklet
Chris Miller
Fixed my DAVID API script after changes to their site's HTML broke it. That's the problem with scraping. DAVID should get with the program and offer a real API. http://github.com/chrisam...
Michael Barton
I've found that maintaining your own custom blogging engine is a pain. - Michael Barton
"I cannot believe that it has taken us until 2009 to do it properly" - I'd be surprised if that were true. Anyone remember bloxsom? - Neil Saunders
Apparently this is how the bbc news site is maintained. Lots of perl scripts generating static content pages. - Michael Barton
I've been playing with jekyll as a static content generator and like it but not likely to use it to maintain a primary blog - Deepak Singh from iPhone
Ruby for Bioinformatics
What's New in Edge Rails: No REST for the weary - http://weblog.rubyonrails.org/2009...
imabonehead
"Sun Microsystems' JRuby team is leaving the company to work for application hosting company Engine Yard, citing the uncertainty surrounding Sun's planned acquisition by Oracle. Sun hired Charles Nutter and Thomas Enebo, often called "the JRuby Guys," about two-and-a-half years ago so they could work full time on JRuby, an implementation of the Ruby programming language for the Java Virtual Machine. Some months later Sun hired Nick Sieger, another key JRuby developer. All three will start work at Engine Yard next week. Nutter said they decided to leave Sun largely because of the uncertainty resulting from its acquisition by Oracle, a deal that's expected to close later this summer pending regulatory approvals." - imabonehead from Bookmarklet
"Engine Yard, which offers hosting for Ruby on Rails applications, is hiring the team because it's seeing increased use of JRuby by Java Web developers and lacks expertise in that area, said Michael Mullany, its vice president of marketing. A recent survey by Evans Data showed the number of Ruby developers increasing 40 percent from a year earlier, he said." - imabonehead
Interesting. - Neil Saunders
Some more discussion here http://friendfeed.com/igrigor... - Deepak Singh
Deepak, thanks for the link. - imabonehead
HOHO - William Wang
Abhishek Tiwari
txt2re: headache relief for programmers :: regular expression generator via @CameronNeylon - http://txt2re.com/
txt2re: headache relief for programmers :: regular expression generator via @CameronNeylon
Ruby for Bioinformatics
What's New in Edge Rails: The BugMash Edition - http://weblog.rubyonrails.org/2009...
Ruby for Bioinformatics
Neil Saunders
This is new to me: "Ruby Programming for Medicine and Biology (Jones and Bartlett Series in Biomedical Informatics)" - http://www.amazon.com/Program....
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Deepak Singh
Ruby and Bioinformatics » Blog Archive » Ruby books I’m reading - http://ruby.genedrift.org/...
Need to check out The Well-Grounded Rubyist. Wondering if I should get PR 1.9 (I have the pickaxe book in print, but never read print books) - Deepak Singh from Bookmarklet
The PR 1.9 is the new version of the pickaxe. The Well Grounded Rubyist is very nice. - Paulo Nuin
Just got the pdf version. Will probably get that for PR 1.9 as well. PragProg really good about updates as well - Deepak Singh from IM
Better than Manning. - Paulo Nuin
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