Shirley Wu
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October 1 at 11:45 am - Link
DailyScan got to it before I even read it! http://www.genome-technology.c... - Shirley Wu
Russ says: "Jeez. Who the hell reads blogs? PLOS and NATURE wanted me to write an editorial, but this was way easier and got probably as much impact already featured in a industry newsletter. I'm humbled and freaked out now." :D - Shirley Wu
Nice!!!! - Deepak
Let's put InChIKey's in abstracts! - Egon Willighagen
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posted an entry on I was lost but now I live here
September 29 at 7:20 pm - Link
Obviously there are many approaches to writing papers... this is just one that my advisor favors - Shirley Wu
Lots of good advice there. I'd add: start with a plan of what your figures + tables will be, build around that. They really are the key. - Neil Saunders
Back when I did Honours, one of our exams was to reconstruct a paper given only the key figures and tables. We even had to suggest a title :) It was a great exercise and has stayed with me ever since. - Neil Saunders
Super stuff. - Richard P Grant
"People are dying" I like that, must include it in my next paper / grant application - Duncan Hull
I would just change the writing order. The abstract is typically one of the last things I write. I usually go Results -> Introduction -> Discussion -> Supplementary Material & References -> Abstract & Letter to the editor(s) - Pedro Beltrao
Regarding when to write the abstract, I tend to first write the abstract, then the rest of the paper, and the rewrite the abstract completely. I find the first version of the abstract to be a big help when writing the manuscript, but it is impossible to write the final abstract before the rest of the manuscript is finished. - Lars Juhl Jensen
I'm with Lars - writing the abstract helps me focus on the main points of the paper and then later on I will at least tweak it if not rewrite it completely. Especially if you're forced to resubmit your paper as a "Methods" paper rather than a "Research" paper as originally intended, or vice versa, since one has a much stricter word limit than the other! - Shirley Wu
Like Lars and Shirley, I always wrote the abstract first. Helps you distill your thoughts and really understand what the role of the paper is - Deepak
Results ->Figures -> (Results again) -> Discussion -> Methodology -> Introduction -> Abstract - Cameron Neylon
Sad, really... (no offense) all this focus on publishing... let's start discussing "How to do research" again... After all, I'm not interested in "How to buy yourself chemicals" either... (BTW, Draw Structure -> Google -> Buy at S-A) - Egon Willighagen
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“Thesis defense finally scheduled (12/2/2008)! Getting one time where all 5 people could make it hopefully the hardest part...”
Thursday at 4:23 pm - Link
I had 6 ... pain in the neck. Good luck!!! - Deepak
good luck :) - Pedro Beltrao
Best of luck! :) - Ricardo Vidal
4 for me, I think. Brake a leg! - PauloNuin
I never had a viva or defence - makes it easier to schedule! Good luck! - Cameron Neylon
p.s. sneaky trick scheduling it in the past - I never would have thought of that :) [Oh yeah - US dates...] - Cameron Neylon
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posted an entry on I was lost but now I live here
Thursday at 11:47 pm - Link
Its a great soundbite - I also like the fact that incremental is key - it implies the need to re-aggregate the bite sized chunks into bigger pieces - Cameron Neylon
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“Though I have no experience with rural life, I often feel the urge to drop everything and go work on a farm. The more time passes, the stronger the urge is. I feel that soon I will have to act on it. Crazy?”
September 30 at 4:43 pm - Link
Same here. I would highly encourage you to investigate Joel Salatin and Polyface farms. http://www.polyfacefarms.com/. - torque
I am such a city boy that I'd be a raving lunatic after a few days of rural life. Well, if I can get good espresso and have high speed wifi, I might survive for a while - Deepak
I get this urge about once a day. And there are plenty cheap farms to be had in Queensland. Fortunately, my more level-headed partner keeps me in check. - Neil Saunders
Neil, those farms are cheap because they're sun-bleached God-forsaken wastelands that can hardly support a few mangy kangaroos and a zillion or so blowflies. :-) - Bill Hooker
Crazy - hard work, no money, and no-one interested in buying what you produce, except supermarkets for whom the term 'indentured labour' is a modern and progressive business practice - Cameron Neylon
I don't think I'd actually farm. I'd just, you know, hang out and chop wood. - Neil Saunders
Shirley, you can come work on my farm any time you're in Maryland. I have a couple goats that like human attention and plenty of wood to chop. I don't plant any fields, though, because my property is all hardwood forest. Plenty of fields of crops next door, though. - Jim Hardy
Thanks, Jim! I'll keep that option in mind. @Cameron, hard work yes, but not necessarily less enjoyable or gratifying. Sometimes I just need something tangible. - Shirley Wu
Oh, that's easy then - get in a lab and do some proper science :-) - Cameron Neylon
Cameron, I am preparing some "proper science" on the homestead. Taking the Stamets "Saving the World Through Mushrooms" route. One advantage to having hardwoods and 11 acres of a steep north-facing hillside is that I have plenty of substrate for cultivating 'shrooms. So I plan to "Get into the woods" and do some proper science! - Jim Hardy
@cameron - touche! Except I prefer the lab of the great outdoors. Too many goggles and gloves and chemicals and breakable things for me in the wet lab. @Jim - sounds like a recipe for creative visions, something science can't do without! - Shirley Wu
@Shirley "sounds like a recipe for creative visions": don't think those kind of 'shrooms are indigenous to my area ;-) - Jim Hardy
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October 1 at 3:22 pm - Link
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September 30 at 5:55 pm - Link
And I wonder who the 'blog angel' is... - Cameron Neylon
We all know - Deepak
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“Talked to my mom (a pharmacologist) today about open science stuff and she had this thought that kind of floored me because it seemed leap years ahead of where we are right now. Now I'm realizing that it's really just a concise way to encapsulate stuff we've all been talking about. Blog post, soon..”
September 30 at 11:44 pm - Link
Looking forward to it - Deepak
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September 30 at 5:17 pm - Link
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September 24 at 4:50 pm - Link
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September 17 at 11:28 pm - Link
anyone know anything about this site? I just found it but not sure if it's legit - Shirley Wu
It's based on code from a little-known and unloved project of mine; http://groups.google.com.au/gr... - Neil Saunders
Interesting... - Egon Willighagen
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posted an entry on I was lost but now I live here
September 20 at 10:23 pm - Link
In a twisted kind of way - I'm guessing based on this description that this kind of approach is a primarily US thing - you would never get a PI doing karaoke at a departmental do in the UK - Cameron Neylon
Shirley, did you get a recording of 'Informatician Rhapsody'? - Graham Steel
@Cameron - I don't even know if it's a US thing, it might just be this particular department is more... brazen, self-assured, socially courageous, ridiculous, etc. @Graham - I'm not sure if there's a recording but it's possible, since someone recorded our "We are the nerds" two years ago. Then again, even if there is a recording I don't know if I can make it public. What happens at the retreat stays at the retreat. ;) - Shirley Wu
Our departmental retreats (for both university and hospital department - I get everything double) are no fun at all. They're just talks and poster sessions from 8 AM to 6 PM, and if you're lucky you get a coupon for one free drink if you survive all that. That's it. The Christmas parties are where singing happens. - Eva
I thought departmental retreats were an excuse for merrymaking and drunken debauchery :)? - Deepak
Our departmental retreat is today 9am to 4.30pm - talks, posters, lunch, no karaoke and I'm still not desperate to attend... - Daniel Swan
Hm, I guess I'm lucky to be part of two departments who don't mind having some fun. For departments who don't provide alcohol at retreats - don't they know that alcohol greases the wheels of collaboration? - Shirley Wu
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posted an entry on I was lost but now I live here
September 19 at 11:18 am - Link
Great job, Shirley! - Bill Hooker
Wonderful stuff - Deepak
**** meaning 5 stars Shirley !! - Graham Steel
Many, many stars - that is a brilliant and pretty comprehensive summary of the last few months - Cameron Neylon
comprehensive. great work. - Richard Akerman
Thanks everyone! - Shirley Wu
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September 17 at 11:13 pm - Link
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September 6 at 1:17 pm - Link
Has Russ Altman started blogging because of the Science blogging challenge http://blogs.nature.com/wp/nas... or was there another reason? - Duncan Hull
I believe so, yes. - Richard P Grant
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September 14 at 12:52 am - Link
Oh no, I'm supposed to sleep and now I'm hungry. - torque
I'm supposed to sleep but instead I'm blogging about pork buns! - Shirley Wu
Stop saying pork buns already! Now I'm going lie in bed thinking about it - especially craving 菜肉包 (vegetable pork buns) from You's Dim Sum on Broadway in SF. So cheap, so tasty and sooo bad for you. - torque
Mmm pork buns....and so much simpler than the bbq pork version that we have done once or twice (because the pork needs to be cooked three times!) - Cameron Neylon
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September 10 at 4:27 pm - Link
Trying a little experiment - see the blog comment - Neil Saunders
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September 9 at 3:43 pm - Link
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Large Hadron Collider rap video
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September 6 at 1:22 pm - Link
well spotted Wu !!! WTG - Graham Steel
a friend of mine showed it to me - I was very impressed with the quality of the rapping! most amateur rap is hard to listen to, but this had the groovy rhythm goin - Shirley Wu
Good find! Great stuff. - Matt Wood
and not just the rap...the lyrics makes actual sense. - Massimo Pinto
Reminds me of early Beastie Boys :) good job Shirley - Daniel Jurczak
and the science is right on - Deepak
Not to be confused with this, then: http://www.halfbakery.com/idea... - Ian Tindale
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posted an entry on I was lost but now I live here
September 4 at 11:45 pm - Link
Public announcement coming soon but in the meantime spread the word - Cameron Neylon
Cool challenge! But it will be hard explaining why the hell an old guy should blog. You either feel that this is what you want to do or you don't. - Björn Brembs
The challenge is to find someone who does want to, but doesn't realise it yet :-) - Cameron Neylon
Yup, great idea. I'm hassling all the Professors I know. Maybe we'll have 15 senior professors blogging by this time next year? http://duncan.hull.name/2008/0... - Duncan Hull
actually we ought to propose a tag for this to aggregate 'senior-sci-blog'? - Cameron Neylon
"sci-blog" kinda makes me think of "cyborg"... maybe not too far off. ;) but probably a good tag - Shirley Wu
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