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VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data. -
April 16, 2012
CiteULike: sjcockell's library
BMC genomics, Vol. 13, No. 1. (5 April 2012), 131, doi:10.1186/1471-2164-13-131 ABSTRACT: BACKGROUND: The procedural aspects of genome sequencing and assembly have become relatively inexpensive, yet the full, accurate structural annotation of these genomes remains a challenge. Next-generation sequencing transcriptomics (RNA-Seq), global microarrays, and tandem mass spectrometry (MS/MS)-based proteomics have demonstrated immense value to genome curators as individual sources of information, however, integrating these data types to validate and improve structural annotation remains a major challenge. Current visual and statistical analytic tools are focused on a single data type, or existing software tools are retrofitted to analyze new data forms. We present Visual Exploration and Statistics to Promote Annotation (VESPA) is a new interactive visual analysis software tool focused on assisting scientists with the annotation of prokaryotic genomes though the integration of proteomics and... -
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