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Thomas Webber

Thomas Webber

I am a 1st year Medical Biochemistry Student at University of Leicester
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BBC News - Key breast cancer 'driver' gene found - http://www.bbc.co.uk/news...
This links VERY nicely to my "role of genomics in cancer medicine" essay that I wrote last semester - which I reread the other day to try to keep it fresh in my mind, as I found the subject to be very interesting. At the time I talked about Her2, an "oncogene" which helps to "personalise" medication courses . Now another such gene has been discovered in the same cancer. - Thomas Webber from Bookmarklet
#MyDiary 19/02/11
I am finally starting to settle into the week's routine - it's a lot of hours in uni, but now I feel I am at least making use of it. This weeks #MB1005 lectures were very good, even if I felt that the practical's worksheet was beyond confusing (my beef with it is that we were guided nicely through all of the questions in the previous report in a logical way, but in this practical we were dropped in at the final steps of the understanding and then essentially asked to work backwards. This was made worse by conflicting advice from the demonstrators (more like instructions - at one point my instructor asked why I had written something as I had before crossing it out and 'correcting' it)). I've also been enjoying all aspects of microbiology ( #BS1009 )and have found all of the #MB1031 lectures to be really enjoyable/useful. I'm going to get a CV drafted over the weekend ready for any applications I may need to make; this should keep me prepared. - Thomas Webber
I now have a profound admiration for #MB1005 / #BS1005 lecturer Professor Ketley after a humorous reply to a request to have his lecture slide formatting changed so I can print out 6 slides per page. Great guy!
Haha, what did he say? - Rachel Bell
His response via email was just as flippant as his lecturing style. I very much appreciate this! - Thomas Webber
#MyDiary 10-02-11
The week is going well, even if I feel a little overwhelmed by the lack of free time. I'm really not a fan of thursdays due to the heavy schedule, but at least it gets a lot of work done all at once. Like most people I am enjoying the practicals more this semester, probably because they feel more engaging and slightly less laborious (due to a great deal of work being packed in to get the widest view of each practical subject). I am delighted with the #MB1004 (membranes and receptors) module, not just because of Dr Norman's great teaching style, but also because I'm finding this to be the most mentally stimulating module for me. Looking forward to the workshop tomorrow! - Thomas Webber
I also find the module interesting his book is very good and would advice you having a look at it. - James Muir
Also liking Dr Norman's lecturing style a lot! The concepts seem to be higher-level but it reassures me a bit that he's teaching us. :) - Zainab Chaudhary
Cassava packs a protein punch with bean genes - environment - 03 February 2011 - New Scientist - http://www.newscientist.com/article...
"Although cassava is a major source of protein for 700 million people, mostly in Africa, it normally contains only small amounts of protein." The plant was genetically modified by inserting bean and maize genes to bolster the protein content to 12.5%. The plant sacrificed some of it's source of nitrogen - cyanide - to help build this new protein. Convenient for the scientists, and very helpful to African children, 1 in 4 of which can die from protein-energy malnutrition. Watch this space! - Thomas Webber from Bookmarklet
BBC iPlayer - Horizon: 2010-2011: Science Under Attack - http://www.bbc.co.uk/iplayer...
This is an extremely well reasoned episode of horizon in which the public's view of the scientific process is scrutinised. The importance of scientific evidence and it's presentation are highlighted. A fascinating watch. - Thomas Webber from Bookmarklet
Mad cow disease is almost extinct globally - health - 26 January 2011 - New Scientist - http://www.newscientist.com/article...
This article gave credit to the scientists who worked on preventing the up-rise of vCJD and who tried to convince the UK government that the threat of human BSE was very real before the first cases of vCJD were seen. This has links to #BS1009 regarding the identification of new diseases caused by microorganisms, just as BSE was in the mid-1980's. - Thomas Webber from Bookmarklet
#MyDiary 02-02-2011
I feel I have started this week well, perhaps better than any last term. I made sure I understood my timetable last weekend and went through all of the first lectures for the new modules. I'm definitely noticing that this makes lecture notes easier. I went to the SWIFT meeting on monday which I found relatively useful, even if I was a little too tired and too hungry to fully appreciate it. Tuesday's microbiology practical was a mixed affair, as the content was really enjoyable when you were doing it, and I've always found microscopes easy enough to use. However the instructions we had been given and told to read through were virtually unintelligible! Full of complete jargon and missing out on the simplistic wording that non-experts can understand. At one point after placing a sample of E. coli on a slide I was told to "dry the film" at which point I began looking around for whatever a "film" could have been. After a few wasted minutes searching around and beginning to feel that I had... more... - Thomas Webber
some useful feedback on terminology for the #BS1009 practical notes there Thomas - thanks! - Dr Jo Badge
If there's something you don't understand, you should ask the demonstrator. - Dr Alan Cann
I totally agree with what you are saying about the practical Thomas, and Dr Cann he did say that he asked a demonstrator, I find that a lot of the time the demonstrators have a lot of students in a group and you have to sometimes wait quite a while anyway.. - Rachel Bell
The danger of unreliable paternity tests - http://www.newscientist.com/article...
Read this article, and though it brings up a perplexingly unregulated scientific business, it also tells of an uncommon use (and an ill-advised use, if the article is anything to go by) of Single nucleotide polymorphisms (SNP's). I found out about SNP's during my research for my genomics essay for #MB1030. - Thomas Webber
like the article... not the tests - Dr Chris Willmott
SIRT3 Deacetylates Mitochondrial 3-Hydroxy-3-Methylglutaryl CoA Synthase 2 and Regulates Ketone Body Production - http://www.cell.com/cell-me...
Although the title of this article seems really daunting, the introduction tab of the article (free to view) gives a nice reflection on the metabolism work we've been covering in the final #BS1015 lectures if anyone is interested. Some other key points are raised too, such as the importance of acetylation on enzyme regulation. - Thomas Webber
Untreated diabetes reduces vital brain cholesterol - http://www.newscientist.com/article...
Just thought I'd highlight this short article as it gives a couple of non-membrane related uses of cholesterol; a molecule we've looked at briefly in #CH1070 and #BS1015. It also mentions regulation of cholesterol productions and associated diseases. - Thomas Webber
Protein kinases: evolution of dynamic regulatory proteins - http://www.sciencedirect.com/science...
This is a highly relevant topic to #BS1015 if not to my course (Med Biochem), and this article gives a history of Protein Kinases in language I am just able to understand. I have yet to read the article in its entirety, but I am sure I will come back to it to further my understanding of these highly important proteins. - Thomas Webber
Complex language! But article is really interesting - Arun Bahl
The Krebs - Song by Science-groove - http://www.science-groove.org/Now...
I found this at A-level, and I am guessing that it may actually come in useful after the next #BS1015 lecture. Funny song, high level and the best Biology related song by these guys! - Thomas Webber from Bookmarklet
Soo cheesy but helpful :-) - Rachel Nolloth
Haha, this is why friendfeed is helpful, peers sharing beneficial information for others to learn from. These songs are terrible but they start to stick in your head, thank you - Luke De Moya
Haha how on earth did you come across this?! Thanks for the link Tom :) - Ria Patel
Haha this is actually quite useful, if a little strange :) Thanks for the link!! - Kelly Barnett
interesting link.. how useful - Khetase Chiwowa
#FridayReflection Google Reader - addiction or annoyance? How many feeds are you subscribed to on Google Reader and how often do you go there? Could you live without it?
Definitely annoyance, but I know that if I was using it more often and with less pressure placed upon its use I could really get into it, as some of the articles I can pick up are really relevant and interesting. After all I am on this course because I really enjoy the content, so I would love to be learning more about what we hear about in lectures. However I have reached the point where the pile of unread articles seems to have reached critical mass... Very daunting indeed. - Thomas Webber
"Mark All As Read" - don't try and read everything. there isn't going to be an exam in Google Reader! - Dr Alan Cann
Pick out relevant titles on google reader that link to our course and then read about it, this way they will be specific and you won't be reading endless articles - Luke De Moya
Well I don't read everything, I read the titles when I am looking for something to read, but the number of 'unread' (as they don't show up once viewed) articles is very large and so I lose motivation, needle in a haystack situation trying to find useful articles. - Thomas Webber
"Mark All As Read" - then it won't be. - Dr Alan Cann
I am glad to see the sort of structure the #BS1015 exam will be taking and I am pleasantly surprised to hear of extra marks available for putting in that little bit of extra knowledge in questions. Hopefully next time revision will help me get a good mark.
My experience with Excel was not great today regarding #BS1015 practical calculations. I converted the file to the newest version of Excel, and I think that ruined my plots. It seems if you aren't having luck with the plotting, just reopen the file from blackboard and copy in your data, and it miraculously works. Not entirely sure why, but hey.
I did my #BS1015 practical write up in the library, and had no trouble with my plotted points. Did you do yours on a different computer? - Roshan Rupra from iPhone
Hmm, I have Excel 2010 and I had no problems at all, unless you're on a Mac? - Sami Kimyongur
I deleted some data and the graph had a problem with that. No worries I'm guessing its just a complex inter-linking of cells that I messed up in the background. - Thomas Webber
Can anyone recommend any suitably-levelled google reader RSS feeds? Many of mine seem to be far too advanced.
Come along to the help session and we'll find out what you're interested in and talk you through it. - Dr Alan Cann
Have you searched or subscribed to News RSS feeds such; New scientist, Medical News Today, ScienceDaily, Scientific American, Nature etc? - Nicholas Clarke
BBC? - Dr Jo Badge
I'm having that problem as well. BBC is good but its hard to find articles related to our course - Khai Cheng
Yeah I find that with BBC too. Its a bit hit and miss, sometimes theres a few good articles related to our course and sometimes theres nothing. - Nicholas Clarke
When new scientist does a related article it's usually really good, but it seems like 90% of their articles are about antimatter, space travel, physics etc - Christopher Jones
try http://www.biochemist.org/news... . It's published by the Biochemistry Society and discoveries are reported in magazine articles, with suitable links to the journal where the discoveries are published - Luke Thompson
It feels like a massive weight has been lifted. I was pleased with my final effort for the genomics essay, but I don't feel I could have spend more time on it than I did! I think I need to refine my technique so writing the next essay (whatever it is) doesn't take too long. I did find, however, that keeping a numbered reference list going (cont)
(cont) so using numbers instead of citations, helped speed up my referencing at the end. So at least that's something I can take away from it. - Thomas Webber
Yes this was the first essay where I wrote my reference list as I went along which made things a lot easier as it wasn't rushed at the end. - Rachel Price Tate
Finally finished my #BS1010 group work. It was a fun way of doing things, but required a lot of organisation with meeting everyone. This is a good way of doing essays in my opinion.
Google docs really comes into its own when there are several group members all working at once using the sidebar to help each other. Really useful stuff (when you get around to using it).
Pleased with my mark in #CH1070. I found the lecture today was also really helpful with clearing up some crossed mental wires. I'm also very glad I went through the online practises as they offered some useful answers and (sometimes) helpful feedback.
I thought my group's presentations went well. I'm really glad we were able to do them in a relaxed environment before going on to Tutor presence and then larger audience. The feedback was nice and personal too.
Do we have online access to the #MB1030 articles for the presentations? I would like to find the original image from mine but I need to be a member of the Biochemical Society to view the article.
We have not given you electronic copies (though I don't think you DO need Biochem Soc membership to read the Biochemist) - Dr Chris Willmott
Thanks. I just had to register (free) to view the article. - Thomas Webber
First whole human liver built in lab - http://www.newscientist.com/article...
(this is not related to the content of any of my modules to date) I found this research, based upon building organs or structures of the body from their scaffold and then adding stem cells to differentiate into the correct cells, extremely fascinating. It is also great to be able to follow the developments in this field, from the artificial trachea in 2008 up until now; real progress is being made, which is great for the people in desperate need of transplants. - Thomas Webber
Thaks for the post, that is quite interesting. - Pritesh Mistry
The research was very interesting to read, I find it remarkable that break throughs such as this are being made. The possibilities stem cells hold for the future of medicine in general is fascinating. - James Haddock
Naked and ugly: The new face of lab rats - http://www.newscientist.com/article...
Naked mole rats; who knew. ( #BS1015 ) These animals seem to have much more efficient mechanisms in place within their cells to protect their DNA from replicating if it is damaged. Their proteins also are much more stable and so are able to be damaged more than proteins of other species'. These factors contribute the ability of the naked mole rat to live 10 times longer than mice or rats. The naked mole rat is a gold mine of important possible biological advances. - Thomas Webber
I'm finding the notes on blackboard under each lecture (of #BS1015 at least) are a great way of going over the notes you made to check that you took everything down, as some of what is getting said is there but not on the slides. There are also some nice questions for extending knowledge.
I was quite disappointed with my feedback session given I was essentially told 'this was more to test how well you could write' and the number of marks I lost seemed disproportionate to the things I was told I did wrong.
I think the aim of this exercise was to: make sure you are able to take effective notes during lectures, make sure your writing can be read for future written essays, and to help you to understand how to structure an essay. What was it you lost marks on? - Hollie Smith
And did you ask why you got the mark you did? This was an opportunity to find out. #UoLfeedback - Dr Alan Cann
@Hollie nice summary of the aims of the exercise - Dr Chris Willmott
I did ask what I had lost marks on, and was told essentially next time to not write one sentence paragraphs and to ensure that acronyms are used correctly (what they stand for introduced the first time they are used). After speaking to others they seem to have received much more detailed advice on further essays. - Thomas Webber
@Tom those are both useful pieces of advice, with important relevance to all of your future work. It may be (and I say this without looking up your mark) that these seem relatively minor because your work was generally of quite a good standard. Other people may have had more fundamental issues that needed to be addressed. This is why you get individual feedback - think about how you can address the issues raised for YOU. - Dr Chris Willmott
I could apply advice given to other students to my piece of work as well, but they were not highlighted as errors or areas that I needed to improve/work on, and for the 2 items I was picked up on as doing wrong I lost nearly a third of the available marks, seemingly disproportionate. - Thomas Webber
Well you could email your tutor and clarify it :) Usually I really don't care that much about marks but I do care about the feedback. I would be more happy if tutors didn't tell me my marks so that I would be forced to read the feedback and improve my essays. When I was in my high-school, I remember students always compare marks and when anyone got good grades they generally didn't seem to read the comments and improve even more. Well this is just my view :) - Jigishu Ahmed
From what I remember about last year, a lot of the marking can seem quite severe. One way to look at it is that at least now you'll never forget to define acronyms and write shorter sentences! Try not to get too hung up on marks in your first year, it's much much more useful to focus on the feedback and what you can improve next time. - Alice Merrill
The first assignment always tends to shock people as they are still writing in college format, and so it hits you quite hard especially when you've done very well in essays and the like before! Have you tried using the SSDS service in the library? They do some great sessions on how to improve writing your essay in more of a university fashion.... more... - Jaspreet Seehra
For anyone wanting to easily add Harvard style referencing in Word 2007 but have noticed it is missing from the referencing tab, download this: http://bibword.codeplex.com/release... it adds it to the drop down list
Interesting, can you explain how this works? I assume you can't use this on the CFS version of MSWord? - Dr Alan Cann
The instructions are on the site, and I've only tried it on my copy of MSWord on my laptop. Essentially you download the zipfile, expand to a folder somewhere then copy the files into the destination (given on the website). I would assume that students cannot add it to the CFS version because you need Administrative privileges to add it. Maybe you could sort out adding it onto the main system? One gripe however is that I have not been able (using Harvard AGPS) to add website references, so I had to do - - Thomas Webber
- that myself using NeilsToolbox - http://www.neilstoolbox.com/bibliog... - which automatically creates (slightly out-of-date) Harvard references. I've found that using the guide linked to on an earlier #BS1010 module is easier though - http://libweb.anglia.ac.uk/referen... - Thomas Webber
It's unlikely that IT Services would add this to CFS. - Dr Alan Cann
There is an alternative that is provided by the university: Refworks http://www.le.ac.uk/library... this has a 'cite'n'write' feature so that you can insert references stored in refworks into Word. There is a bookmarklet to help you add references to refworks and there is a 'school of biological sciences' referencing output style :-) - Dr Jo Badge
For those who missed it, or just wanted to see it again, here is the movie for the "events in decoding from initial binding to peptidyl transfer, based on a structure of EF-Tu with the ribosome: silent version or with music." (Choose with music)
http://www.mrc-lmb.cam.ac.uk/ribo... - what was shown at the end of Venkatraman Ramakrishnan's lecture on the ribosome - Thomas Webber
I was just wondering about reposts, do they count as contributions? (obviously one would hope they would be unintentional)
As long as the note describing them and explaining why you chose them is original, yes, reposts count. - Dr Alan Cann
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