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Running a picard tool in the #KNIME workflow engine - http://plindenbaum.blogspot.com/2013...
Inside the Variation toolkit: annotating a VCF with the data of NCBI biosystems mapped to BED. - http://plindenbaum.blogspot.com/2013...
Playing with the "UCSC Genome Browser Track Hubs". my notebook - http://plindenbaum.blogspot.com/2013...
Inside the Variation Toolkit: Gene Ontology for VCF, GUI for VCF - http://plindenbaum.blogspot.com/2013...
Mapping the annotations of a query sequence on a BLAST hit, my notebook. - http://plindenbaum.blogspot.com/2013...
How to fit a sentence in a rectangle with the Hershey vectorial font. - http://plindenbaum.blogspot.com/2013...
Binding a C library with Javascript/ #mozilla. An example with the Tabix library - http://plindenbaum.blogspot.com/2013...
Filtering a VCF with javascript - http://plindenbaum.blogspot.com/2013...
A Tribble/FeatureCodec handling JSON-based annotations files. - http://plindenbaum.blogspot.com/2013...
Drawing a Timeline with jquery. - http://plindenbaum.blogspot.com/2013...
Drawing a Timeline with jquery.
Inserting the result of a BLAST into a Database using XSLT. - http://plindenbaum.blogspot.com/2013...
Java JNI bindings for BWA(mem-lite) - http://plindenbaum.blogspot.com/2013...
playing with BWA-MEM : my notebook - http://plindenbaum.blogspot.com/2013...
Embedding Pubmed, Graphiviz and a remote image in #LaTeX. My notebook. . - http://plindenbaum.blogspot.com/2013...
Filtering a BAM with javascript. - http://plindenbaum.blogspot.com/2013...
4 Tools I wrote today to annotate VCF files. - http://plindenbaum.blogspot.com/2013...
Counting the reads in a BAM file using SGE and the Open-MPI library: my notebook. - http://plindenbaum.blogspot.com/2013...
Making use of Picard Metrics files using XML and XSLT. #ngs - http://plindenbaum.blogspot.com/2013...
Samtools tview as a library to display the BAM - http://plindenbaum.blogspot.com/2013...
A XML schema (xsd) for GeneOntology - http://plindenbaum.blogspot.com/2013...
RDF/Jena: a simple extension for XSLT/XALAN. Testing with NCBI-Gene - http://plindenbaum.blogspot.com/2012...
Reading/Writing a VCF file with the GATK-API. - http://plindenbaum.blogspot.com/2012...
visualizing the dependencies in a Makefile - http://plindenbaum.blogspot.com/2012...
Creating a virtual RDF graph describing a set of OpenOffice spreadsheets with Apache Jena and Fuzeki - http://plindenbaum.blogspot.com/2012...
Saving your tweets in a database using sqlite, rhino, scribe, javascript - http://plindenbaum.blogspot.com/2012...
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