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Inserting the result of a BLAST into a Database using XSLT. - http://plindenbaum.blogspot.com/2013...
Java JNI bindings for BWA(mem-lite) - http://plindenbaum.blogspot.com/2013...
playing with BWA-MEM : my notebook - http://plindenbaum.blogspot.com/2013...
Embedding Pubmed, Graphiviz and a remote image in #LaTeX. My notebook. . - http://plindenbaum.blogspot.com/2013...
Filtering a BAM with javascript. - http://plindenbaum.blogspot.com/2013...
4 Tools I wrote today to annotate VCF files. - http://plindenbaum.blogspot.com/2013...
Counting the reads in a BAM file using SGE and the Open-MPI library: my notebook. - http://plindenbaum.blogspot.com/2013...
Making use of Picard Metrics files using XML and XSLT. #ngs - http://plindenbaum.blogspot.com/2013...
Samtools tview as a library to display the BAM - http://plindenbaum.blogspot.com/2013...
A XML schema (xsd) for GeneOntology - http://plindenbaum.blogspot.com/2013...
RDF/Jena: a simple extension for XSLT/XALAN. Testing with NCBI-Gene - http://plindenbaum.blogspot.com/2012...
Reading/Writing a VCF file with the GATK-API. - http://plindenbaum.blogspot.com/2012...
visualizing the dependencies in a Makefile - http://plindenbaum.blogspot.com/2012...
Creating a virtual RDF graph describing a set of OpenOffice spreadsheets with Apache Jena and Fuzeki - http://plindenbaum.blogspot.com/2012...
Saving your tweets in a database using sqlite, rhino, scribe, javascript - http://plindenbaum.blogspot.com/2012...
tumblwip: We went to Paris for a couple of days. These are some drawings of some of the buildings there. And, just a quick message to anybody who has an apartment in Paris; I hate you. - http://lindenb.tumblr.com/post...
tumblwip:
 
We went to Paris for a couple of days. These are some drawings of some of the buildings there.
And, just a quick message to anybody who has an apartment in Paris; I hate you.
pulmonaire: Drawing by Gabriel Moreno - http://lindenb.tumblr.com/post...
pulmonaire:
  
Drawing by Gabriel Moreno
Modifying the GATK so it supports a XML-based format for VCF. - http://plindenbaum.blogspot.com/2012...
Calculating time from submission to publication / Degree of burden in submitting a paper - http://plindenbaum.blogspot.com/2012...
Playing with the #Ensembl REST API: filtering a VCF with javascript - http://plindenbaum.blogspot.com/2012...
LEGO Great Ball Contraption (GBC) Layout 2012.9 - http://www.youtube.com/watch...
LEGO Great Ball Contraption (GBC) Layout 2012.9
Play
Describing protein-protein interactions in XML: customizing the xsd-schema with JAXB, my notebook. - http://plindenbaum.blogspot.com/2012...
Notes about bwa 0.6.2 and the multiples hits. - http://plindenbaum.blogspot.com/2012...
Translating a DNA sequence into a Google Spreadsheet using #GoogleAppScript - http://plindenbaum.blogspot.com/2012...
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